CN181890

Overview
NameCN181890
Unique NameCN181890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_DROOB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila obscura GN=Sod PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.129e-26
Identity = 58/108 (53.70%), Postives = 67/108 (62.04%), Query Frame = -2
Query:  261 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHAD 581
            KGTV F QE  + P  V+G + GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGDNTNGCMSSGPHFNPRSKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_DROPE (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila persimilis GN=Sod PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.090e-26
Identity = 58/108 (53.70%), Postives = 66/108 (61.11%), Query Frame = -2
Query:  261 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHAD 581
            KGTV F QE  + P  V+G   GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_DROPB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila pseudoobscura bogotana GN=Sod PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.090e-26
Identity = 58/108 (53.70%), Postives = 66/108 (61.11%), Query Frame = -2
Query:  261 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHAD 581
            KGTV F QE  + P  V+G   GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_DROMI (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila miranda GN=Sod PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.090e-26
Identity = 58/108 (53.70%), Postives = 66/108 (61.11%), Query Frame = -2
Query:  261 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHAD 581
            KGTV F QE  + P  V+G   GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_DROTO (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila tolteca GN=Sod PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 57/108 (52.78%), Postives = 66/108 (61.11%), Query Frame = -2
Query:  261 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHAD 581
            KGTV F QE  + P  V+G + GL  G HGFHVH  G+ TNGCMS+GPHFNP  KEHG P D NRH                 ++ D++I L G NSIIGR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGNNTNGCMSSGPHFNPGNKEHGAPTDGNRHLGDLGNIQAAGDSPTAVSITDSKITLFGANSIIGRTVVVHAD 113          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_DROMD (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila madeirensis GN=Sod PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.354e-25
Identity = 56/108 (51.85%), Postives = 66/108 (61.11%), Query Frame = -2
Query:  261 KGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHAD 581
            KG V F QE  + P  V+G + GL  G HGFHVH  GD TNGCMS+GPH+NP  KEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD
Sbjct:    6 KGIVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHYNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODE_SCHMA (Extracellular superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.023e-20
Identity = 59/137 (43.07%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  171 GTVSFSQEGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 578
            G V F+Q GD    V+GS++GL PG   G HVH  G   N C+  GPHFNP  + HGP     RHA           G A F        L   +  IGRA+V+HA+ DDLG+   E S+TTGN+G R+AC  IG +
Sbjct:   47 GAVWFTQHGDY-MYVNGSVAGLPPGKLLGTHVHRYGGLGNMCLEAGPHFNPFNQRHGPRHGYPRHAGDLGNIRVGRGGVAKFDFYVTIKGLGPFDGFIGRALVIHANRDDLGRNRDEGSRTTGNSGPRLACATIGFR 182          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODE_RAT (Extracellular superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod3 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.615e-19
Identity = 57/142 (40.14%), Postives = 71/142 (50.00%), Query Frame = -2
Query:  177 VKGTVSFSQEG-----DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGP-PEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIG 584
            + G V F Q G     +    + G  +      H  HVH  GD + GC STGPH+NP G  H   P D                G AT         L+GP+SI+GRAVVVHA  DDLGKGG++ S   GNAG R+AC ++G
Sbjct:   85 ITGLVLFRQLGPSSRLEASFNLEGFPAEQNTSNHAIHVHEFGDLSQGCESTGPHYNPLGVPHPQHPGDFGNFVVRDGRLWKHRMGLAT--------SLAGPHSILGRAVVVHAGEDDLGKGGNQASVQNGNAGRRLACCVVG 218          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODE_HUMAN (Extracellular superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD3 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.108e-18
Identity = 61/163 (37.42%), Postives = 77/163 (47.24%), Query Frame = -2
Query:  168 HTAQMVKAVAVLGGTEG-VKGTVSFSQEG-----DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGP-PEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 635
            H A  V+  A L   +  V G V F Q       D    + G  +         HVH  GD + GC STGPH+NP    H   P D    A           G A          L+GP+SI+GRAVVVHA  DDLG+GG++ S   GNAG R+AC ++G+ G
Sbjct:   60 HAACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAA--------SLAGPHSIVGRAVVVHAGEDDLGRGGNQASVENGNAGRRLACCVVGVCG 214          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODE_RABIT (Extracellular superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD3 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.864e-17
Identity = 60/163 (36.81%), Postives = 74/163 (45.40%), Query Frame = -2
Query:  168 HTAQMVKAVAVLGGTEG-VKGTVSFSQEGDGPTT-----VSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGP-PEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 635
            H    V+  A L   +  V G V F Q G G        + G            HVH  GD + GC STG H+NP   +H   P D    A           G A          L+GP+SI+GRAVVVHA  DDLG+GG+  S   GNAG R+AC ++G  G
Sbjct:   64 HAVCRVQPSATLDAAQPRVSGLVVFRQLGPGAQLEAFFDLEGFPVEANLSSRAIHVHQFGDLSQGCDSTGAHYNPLAVQHPQHPGDFGNFAVRDGRLWKYRSGLAA--------SLAGPHSIVGRAVVVHAGEDDLGRGGNAASVENGNAGPRLACCVVGASG 218          
The following BLAST results are available for this feature:
BLAST of CN181890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_DROOB2.129e-2653.70Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROPE8.090e-2653.70Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROPB8.090e-2653.70Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROMI8.090e-2653.70Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROTO1.057e-2552.78Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROMD2.354e-2551.85Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODE_SCHMA1.023e-2043.07Extracellular superoxide dismutase [Cu-Zn] OS=Schi... [more]
SODE_RAT5.615e-1940.14Extracellular superoxide dismutase [Cu-Zn] OS=Ratt... [more]
SODE_HUMAN8.108e-1837.42Extracellular superoxide dismutase [Cu-Zn] OS=Homo... [more]
SODE_RABIT6.864e-1736.81Extracellular superoxide dismutase [Cu-Zn] OS=Oryc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181890 ID=CN181890; Name=CN181890; organism=Citrus sinensis; type=EST; length=651bp
AAAGATGGAGATTATACGAAAACCATTCAACATACACAACAAAGTTTTAG
ATTTCTCTTATTCAAGATCATAGTCTTGAAAAGTCACACTCAAGCATATA
TGGACTATAATGCACTCAAAACATCATATCAAATGAATTTATTATTGTCC
GATGAGATGCGGCTTCATCCTTGGAGGCCAATGATGCCGCAAGCTACTCT
GCCACCAGCATTTCCAGTGGTTTTGCTCAGCTCATGACCGCCCTTGCCAA
GATCATCGGGATCTGCGTGGACTACAACAGCCCTTCCAATAATGGAATTT
GGTCCAGAAAGAGGAATCTGATTGTCAACAACTGTAAAAGTAGCAGTACC
ATCATCACCAACATTGACATTTCCTAAGTCACCAGCATGACGATTCTCAT
CCTCTGGAGGTCCATGTTCTTTTCCAGCAGGGTTAAAGTGGGGTCCGGTA
GACATGCAACCATTTGTTGTGTCTCCAAGAGCATGAACATGGAATCCATG
AGGACCAGGCTTGAGACCAGAGAGGCTTCCTGATACAGTTGTTGGACCAT
CTCCTTCCTGGGAAAAGGAAACAGTTCCCTTGACACCCTCAGTTCCACCA
AGAACTGCAACTGCTTTCACCATTTGTGCTGTGTGATCTCAGAACACCCC
T
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