CN181890

Overview
NameCN181890
Unique NameCN181890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2345 contig Csv1_Contig2345:159..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 3.714e-63
Identity = 116/152 (76.32%), Postives = 127/152 (83.55%), Query Frame = -2
Query:  168 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 623
            MVKAVAVL  +EGV GT  F+Q G  PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHG PEDE RHA           GTA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACGIIGLQG
Sbjct:    1 MVKAVAVLNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 4.851e-63
Identity = 115/152 (75.66%), Postives = 126/152 (82.89%), Query Frame = -2
Query:  168 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 623
            M K V VL  +EGVKGT+ F+QEG+G TTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GK HG PED NRHA           GTATFT+ D+QIPL GPNSI+GRAVVVHA+PDDLGKGGHELS TTGNAGGRVACGIIGLQG
Sbjct:    1 MGKGVRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.081e-62
Identity = 113/152 (74.34%), Postives = 126/152 (82.89%), Query Frame = -2
Query:  168 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 623
            M K VAVL  +EGVKGT+ F+ EG+G TTV+G++SGL+PG HGFHVHALGD TNGCMSTGPHFNP GK HG PED NRHA           GTATFT+ D+QIPLSGPNSI+GRA+VVHADPDDLGKGGHELS +TGNAGGRVACGIIGLQG
Sbjct:    1 MAKGVAVLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGLQG 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.408e-62
Identity = 110/152 (72.37%), Postives = 125/152 (82.24%), Query Frame = -2
Query:  168 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 623
            ++KAV VL G   VKG V F+QEGDGPTTV+G +SGL PG HGFHVHALGDTTNGCMSTGPHFNP GKEHG P D+NRHA           GT  F++ D+QIPLSGP+SI+GRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACG++GLQG
Sbjct:    3 LLKAVVVLNGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCMSTGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGVVGLQG 154          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 3.145e-62
Identity = 116/152 (76.32%), Postives = 126/152 (82.89%), Query Frame = -2
Query:  168 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 623
            M K VAVL  +EGVKGT+ F+QEG+G TTV+G++SGLKPG HGFHVHALGDTTNG MSTGPHFNP GK+HG PED NRHA           GTATFT+ D QIPLSGPNSI+GRAVVVHADPD LGKGGHELS TTGNAGGRVACGIIGLQG
Sbjct:    1 MGKGVAVLNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVACGIIGLQG 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.477e-61
Identity = 113/152 (74.34%), Postives = 122/152 (80.26%), Query Frame = -2
Query:  168 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 623
            MVKAV VL G+ GV G + F+QE DGPTTV+G LSGL PG HGFHVHALGDTTNGC+STGPH+NPA KEHG PEDE RHA           GTA FT+VD QIPL G  SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+ACG IGLQG
Sbjct:    1 MVKAVTVLSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGFIGLQG 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.043e-53
Identity = 97/148 (65.54%), Postives = 114/148 (77.03%), Query Frame = -2
Query:  174 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 617
            KAVAVL GT  V+G V+ +QE DGPTTV+  ++GL PGPHGFH+H  GDTTNGC+STGPHFNP G  HG PEDENRHA           G A  T+VDNQIPL+GPN+++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   70 KAVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGL 217          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.551e-53
Identity = 99/148 (66.89%), Postives = 113/148 (76.35%), Query Frame = -2
Query:  174 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 617
            KAVAVL GT  V+G V+ +QE DGPTTV+  +SGL PG HGFH+H  GDTTNGCMSTGPHFNP  K HG PEDE RHA           G A  T+VDNQIPL+GPNS++GRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   72 KAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGL 219          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.464e-51
Identity = 98/148 (66.22%), Postives = 111/148 (75.00%), Query Frame = -2
Query:  174 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 617
            KAVAVL GT  V+G V+ SQE DGPTTVS  ++GL PG HGFH+H  GDTTNGCMSTG HFNP G  HG PED+ RHA           G A  T+VD QIPLSGPN++IGRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   62 KAVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 209          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.497e-51
Identity = 97/148 (65.54%), Postives = 111/148 (75.00%), Query Frame = -2
Query:  174 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 617
            KAVAVL GT  V+G V+ +Q+ DGPTTV   ++GL PG HGFH+H  GDTTNGCMSTGPHFNP G  HG P DE RHA           G A  T+VDNQIPLSGPNS++GRA+VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   69 KAVAVLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 216          
The following BLAST results are available for this feature:
BLAST of CN181890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC1_SOLLC3.714e-6376.32Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODC1_BRAJU4.851e-6375.66Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]
SODC_BRAOC1.081e-6274.34Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_PINSY2.408e-6272.37Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC2_BRAJU3.145e-6276.32Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_PANGI3.477e-6174.34Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODCP_SOLCS2.043e-5365.54Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_SPIOL4.551e-5366.89Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODCP_VITVI1.464e-5166.22Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODCP_PETHY2.497e-5165.54Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181890 ID=CN181890; Name=CN181890; organism=Citrus sinensis; type=EST; length=651bp
AAAGATGGAGATTATACGAAAACCATTCAACATACACAACAAAGTTTTAG
ATTTCTCTTATTCAAGATCATAGTCTTGAAAAGTCACACTCAAGCATATA
TGGACTATAATGCACTCAAAACATCATATCAAATGAATTTATTATTGTCC
GATGAGATGCGGCTTCATCCTTGGAGGCCAATGATGCCGCAAGCTACTCT
GCCACCAGCATTTCCAGTGGTTTTGCTCAGCTCATGACCGCCCTTGCCAA
GATCATCGGGATCTGCGTGGACTACAACAGCCCTTCCAATAATGGAATTT
GGTCCAGAAAGAGGAATCTGATTGTCAACAACTGTAAAAGTAGCAGTACC
ATCATCACCAACATTGACATTTCCTAAGTCACCAGCATGACGATTCTCAT
CCTCTGGAGGTCCATGTTCTTTTCCAGCAGGGTTAAAGTGGGGTCCGGTA
GACATGCAACCATTTGTTGTGTCTCCAAGAGCATGAACATGGAATCCATG
AGGACCAGGCTTGAGACCAGAGAGGCTTCCTGATACAGTTGTTGGACCAT
CTCCTTCCTGGGAAAAGGAAACAGTTCCCTTGACACCCTCAGTTCCACCA
AGAACTGCAACTGCTTTCACCATTTGTGCTGTGTGATCTCAGAACACCCC
T
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