CN181890

Overview
NameCN181890
Unique NameCN181890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2345 contig Csv1_Contig2345:159..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 78/149 (52.35%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  174 KAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 617
            KAV VL G   V+G ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH            G A  ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 78/149 (52.35%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  174 KAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 617
            KAV VL G   V+G ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH            G A  ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_ASPFU (Superoxide dismutase [Cu-Zn] OS=Aspergillus fumigatus GN=sodC PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 81/152 (53.29%), Postives = 95/152 (62.50%), Query Frame = -2
Query:  174 MVKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            MVKAVAVL G   + GTV+F Q + + PTTVS ++ G  P    GFHVH  GD TNGC S GPHFNP GK HG PED  RH            G A  +  D  I L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLRGDSKITGTVTFEQADENSPTTVSWNIKGNDPNAKRGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDSERHVGDLGNFETDAEGNAVGSKQDKLIKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGARPACGVIGI 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 7.799e-37
Identity = 75/148 (50.68%), Postives = 91/148 (61.49%), Query Frame = -2
Query:  174 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 617
            KAV VL G   V+ T+ F Q+G GP  V G ++GL  G H FHVH  GD   GC S GPHFNP  K+HG P+DE RH            G A   + D+ I LSG  S+IGR +VVH   DDLGKGG++ S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVEATIHFEQKGTGPVVVKGRITGLTEGLHEFHVHQFGDNRQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHEKEDDLGKGGNDESTKTGNAGSRLACGVIGI 151          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 7.799e-37
Identity = 79/152 (51.97%), Postives = 95/152 (62.50%), Query Frame = -2
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            MVKAV VL G   V GTV+F QE +  PTT++  ++G  P    GFH+H  GD TNGC S GPHFNP GK HG P D  RH            G A  +V D+ + L GP+S++GR VVVH   DDLGKGG+E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVCVLRGDAKVAGTVTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVHGGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 79/150 (52.67%), Postives = 96/150 (64.00%), Query Frame = -2
Query:  174 KAVAVLGGTEG-VKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 617
            KAV VL G    VKG ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH            G A+ ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDNSPVKGIINFEQKERNGPVKVWGSIEGLTEGLHGFHVHEFGDNTVGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 153          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 152.14 bits (383), Expect = 2.269e-36
Identity = 81/152 (53.29%), Postives = 93/152 (61.18%), Query Frame = -2
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            M KAVAVL G   V G V+F Q  +  PTT++  +SG       GFHVH  GD TNGC S GPHFNP  KEHG PED+NRH            G A  +  D  + L G NSI+GR VV+HA  DDLGKGG+  SK TGNAG R ACG+IGL
Sbjct:    1 MAKAVAVLRGDSKVSGVVNFEQSSESDPTTITWEISGNDANALRGFHVHTFGDNTNGCTSAGPHFNPFTKEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQDLFVKLIGQNSILGRTVVIHAGTDDLGKGGNAESKKTGNAGARPACGVIGL 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_CLAPU (Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea GN=SOD1 PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.964e-36
Identity = 80/152 (52.63%), Postives = 94/152 (61.84%), Query Frame = -2
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            MVKAVAVL G   V GTV F QE +  PTT++  ++G       GFH+H  GD TNGC S GPHFNP GK HG P DE RH            G A  +V D  + L GP+S+IGR VV+HA  DDLGKG +E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLRGDAKVGGTVVFEQESESAPTTITWDITGNDANAKRGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDEARHVGDLGNLETDGQGNAKGSVKDEHVKLIGPHSVIGRTVVIHAGTDDLGKGDNEESLKTGNAGPRPACGVIGI 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_ASPOR (Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae GN=sodC PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.964e-36
Identity = 79/152 (51.97%), Postives = 94/152 (61.84%), Query Frame = -2
Query:  174 MVKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            MVKAVAVL G   + GTV+F Q + + PTTVS +++G        FHVH  GD TNGC S GPHFNP GKEHG PEDENRH            G A  +  D  I L G  S++GR +V+HA  DDLG+  H  SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLRGDSKISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIGI 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_YARLI (Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytica GN=SOD1 PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 80/152 (52.63%), Postives = 92/152 (60.53%), Query Frame = -2
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            MVKAVAVL G   V GTV+F Q+ + GP TV+  + G  P    GFHVH  GD TNGC S GPHFNP  K HG P D  RH            G A   + D+ + L+G NSI+GR VV+H   DDLGKGGH  S  TGNAG R ACG+IGL
Sbjct:    1 MVKAVAVLRGDSKVSGTVTFEQDSESGPVTVTYDIKGNDPNAERGFHVHEFGDNTNGCTSAGPHFNPFKKNHGGPTDSERHVGDLGNVKTDSEGVAKGVLKDSLLKLTGDNSIVGRTVVIHGGEDDLGKGGHADSLKTGNAGPRPACGVIGL 152          
The following BLAST results are available for this feature:
BLAST of CN181890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_PANTR3.501e-3752.35Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN... [more]
SODC_HUMAN3.501e-3752.35Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
SODC_ASPFU4.572e-3753.29Superoxide dismutase [Cu-Zn] OS=Aspergillus fumiga... [more]
SODC_RABIT7.799e-3750.68Superoxide dismutase [Cu-Zn] OS=Oryctolagus cunicu... [more]
SODC_CORMI7.799e-3751.97Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]
SODC_PONPY1.330e-3652.67Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]
SODC1_DEBHA2.269e-3653.29Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODC_CLAPU2.964e-3652.63Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea... [more]
SODC_ASPOR2.964e-3651.97Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae... [more]
SODC_YARLI3.871e-3652.63Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181890 ID=CN181890; Name=CN181890; organism=Citrus sinensis; type=EST; length=651bp
AAAGATGGAGATTATACGAAAACCATTCAACATACACAACAAAGTTTTAG
ATTTCTCTTATTCAAGATCATAGTCTTGAAAAGTCACACTCAAGCATATA
TGGACTATAATGCACTCAAAACATCATATCAAATGAATTTATTATTGTCC
GATGAGATGCGGCTTCATCCTTGGAGGCCAATGATGCCGCAAGCTACTCT
GCCACCAGCATTTCCAGTGGTTTTGCTCAGCTCATGACCGCCCTTGCCAA
GATCATCGGGATCTGCGTGGACTACAACAGCCCTTCCAATAATGGAATTT
GGTCCAGAAAGAGGAATCTGATTGTCAACAACTGTAAAAGTAGCAGTACC
ATCATCACCAACATTGACATTTCCTAAGTCACCAGCATGACGATTCTCAT
CCTCTGGAGGTCCATGTTCTTTTCCAGCAGGGTTAAAGTGGGGTCCGGTA
GACATGCAACCATTTGTTGTGTCTCCAAGAGCATGAACATGGAATCCATG
AGGACCAGGCTTGAGACCAGAGAGGCTTCCTGATACAGTTGTTGGACCAT
CTCCTTCCTGGGAAAAGGAAACAGTTCCCTTGACACCCTCAGTTCCACCA
AGAACTGCAACTGCTTTCACCATTTGTGCTGTGTGATCTCAGAACACCCC
T
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