CN181873

Overview
NameCN181873
Unique NameCN181873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181873 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 62/189 (32.80%), Postives = 79/189 (41.80%), Query Frame = 1
Query:  223 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPLYPGGSF-DPLXLAD---------DPEAFAELKVKEIKNGRLAMFSM 699
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG    +  A  G+      WF+AGA            +P  +   S   +   Q++LMG VE  R                     A        +  YPGG F DPL LA          D +    LK+ EIK+ RLAM +M
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ--AWTGIP-----WFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAM 242          
BLAST of CN181873 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 79/241 (32.78%), Postives = 94/241 (39.00%), Query Frame = 1
Query:  139 TGSKSVSSGSPWYGPDRVKYLGPFSGEP----PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN----------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLXLA-DDPEAFAELKVKEIKNGRLAMFSMF 702
            T   + S+G+   G    KY G     P    P +L G  PGD G+D  GLS   E             AKN                                  RE E+IH RWAML  LG +  E  A  GV      W +AG       G  Y G   L    SI  +   +V+L+G  E YR         T+P    YPGG FDPL LA +D E    LK  EIK+ RLAM S F
Sbjct:   28 TKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGK--VELDGASYAG---LSLPFSITQLIWIEVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFF 250          
The following BLAST results are available for this feature:
BLAST of CN181873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB4_SPIOL5.335e-1332.80Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB29_CHLRE4.516e-1232.78Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181873 ID=CN181873; Name=CN181873; organism=Citrus sinensis; type=EST; length=702bp
GAGGCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCGACCATGGC
TCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCA
ATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAG
TCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTT
GGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTG
GTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAACCTTT
GCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGG
AGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGT
TCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGC
GGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCAGAGCATCTT
GGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACA
GAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGT
GGCAGCTTTGATCCATTGNGTTTGGCTGATGACCCGGAGGCTTTTGCTGA
GCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGT
TT
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