CN181872

Overview
NameCN181872
Unique NameCN181872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181872 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 67/173 (38.73%), Postives = 81/173 (46.82%), Query Frame = -3
Query:  169 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG----EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 675
            P  + + R  EV + R AML  +GCV+PELL  NGV F   VW K     F                    A+ + QVV    +E +R  GG  G    E  D  YPG  FDP  L  +       K  EIKNGRLAM  MFG  VQ  VT +GP+ NL +HL  P+  N  A
Sbjct:    1 PTVYERMRVAEVFNGRLAMLAIVGCVYPELLG-NGVWF--EVWNKVDFYRF--------------------ALISLQVV--APLEYWRGNGG-FGWDGEEKYDRSYPG--FDPCNLTTE-----YTKAAEIKNGRLAMIGMFGLEVQNHVTAQGPVANLIEHLRHPLAANIGA 140          
BLAST of CN181872 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 65/194 (33.51%), Postives = 79/194 (40.72%), Query Frame = -3
Query:  220 DYGWDIAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 711
            DYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   78 DYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CN181872 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 63/194 (32.47%), Postives = 80/194 (41.24%), Query Frame = -3
Query:  220 DYGWDIAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 711
            D+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LK+ EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   78 DFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CN181872 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 63/194 (32.47%), Postives = 81/194 (41.75%), Query Frame = -3
Query:  220 DYGWDIAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 711
            D+G+D  GL  DP      RE E+IH RWAML  LG    +  A  G+      WF+AGA            +P  +   S   +   Q++LMG VE  R                     A        +  YPGG F DPL LA          D +    LK+ EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   83 DFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ--AWTGIP-----WFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256          
The following BLAST results are available for this feature:
BLAST of CN181872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
LH15_EUGGR2.424e-1338.73Light-harvesting complex I LH35 proteins (Fragment... [more]
CB4A_SOLLC5.970e-1233.51Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC5.054e-1132.47Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL6.601e-1132.47Chlorophyll a-b binding protein CP24, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J17_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181872 ID=CN181872; Name=CN181872; organism=Citrus sinensis; type=EST; length=713bp
CCCCTTTTTTTTTTTTTTTTAGATCAATTGAAGCATTTTATAAATAATCA
CAACTCAAATTAAAGCTTCCATGAGCTCACAACAGATTTACATGATATCC
AAGAAACCGAAAAGAGAAAAACTCTTATCAACCGAAGCTCACTTTCCGGG
GACAAAGTTGGTGGCGTAGGCCCAGGCATTGTTATTGACAGGGTCAGCCA
AGTGGTCGGCCAAGTTCTCTAACGGTCCCTTGCCGGTGACAATGGCCTGA
ACGAAGAAACCAAACATGGAGAACATAGCCAACCTTCCATTCTTGATTTC
CTTAACCTTGAGCTCAGCAAAAGCCTCCGGGTCATCAGCCAAACCCAATG
GATCAAAGCTGCCACCTGGGTACAATGGGTCAGTCACTTCACCGAGCGGC
CCTCCAGCAATTCTGTAACCCTCAACGGCTCCCATCAAGACCACCTGGCA
AGCCCAGATGGCCAAGATGCTCTGAGCGTGGATCAGGCTTGGGTTCCCCA
AGTAGTCAAGCCCGCCCTCGCTGAAGATCTGGGCCCCCGCCTTGAACCAC
ACGGCCTCACCGAACTTGACTCCGTTGCGGGCCAAGAGCTCCGGGAAGAC
GCATCCAAGAGCTCCCAACATGGCCCATCTGCAGTGGATGACTTCGAGTT
CACGGTTCTTGGCAAAGGTTTCTGGGTCAGCTGAAAGCCCAGCAATGTCC
CAACCGTAGTCAC
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