CN181867

Overview
NameCN181867
Unique NameCN181867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME33_ARATH (Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.061e-33
Identity = 64/123 (52.03%), Postives = 79/123 (64.23%), Query Frame = -2
Query:  246 ISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEW--NGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 608
            I+IH   + AA DL+    +  TYLGRPW+ YSRV  M TY+ + I P GW  W    +FAL+T++YGEY N GPGS+   RVRW G+  ITS   AS+FTV   I G SWLP+TGV F  GL
Sbjct:  472 ITIHSSRIIAASDLKPVIRAYKTYLGRPWQAYSRVTIMKTYIDNSISPLGWSPWLRGSNFALNTVFYGEYKNFGPGSSTRWRVRWKGFHAITSTAVASRFTVGSLIAGGSWLPATGVPFKSGL 594          

HSP 2 Score: 30.8018 bits (68), Expect = 4.061e-33
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = -1
Query:  610 KPMAMQKNTITAQNRKDPNQNTG 678
            +P+  Q N ITAQ R DP QNTG
Sbjct:  449 RPLHGQANIITAQGRGDPFQNTG 471          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME39_ARATH (Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 66/117 (56.41%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  258 ISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAF 608
            ISI +C + AAPDL   K +   YLGRPW+ YSR V + +++ D I P GWLE   DFAL+TLYYGEYMN GPG+ +  RV WPG+R I + TEA++FTV  FI GS+WL STG+ F
Sbjct:  412 ISILNCRILAAPDLIPVKENFKAYLGRPWRKYSRTVIIKSFIDDLIHPAGWLEGKKDFALETLYYGEYMNEGPGANMAKRVTWPGFRRIENQTEATQFTVGPFIDGSTWLNSTGIPF 528          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.365e-32
Identity = 58/123 (47.15%), Postives = 80/123 (65.04%), Query Frame = -2
Query:  246 ISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEW--NGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 608
            ISIH+  +  APDL+   G++ TY+GRPW  +SR V + TY+ + + P GW  W     F LDTL+Y EY N+GP S+   RV W G+ V+  A++AS FTV +FI G++WLP TG+ F  GL
Sbjct:  414 ISIHNSRILPAPDLKPVVGTVKTYMGRPWMKFSRTVVLQTYLDNVVSPVGWSPWIEGSVFGLDTLFYAEYKNTGPASSTRWRVSWKGFHVLGRASDASAFTVGKFIAGTAWLPRTGIPFTSGL 536          

HSP 2 Score: 31.9574 bits (71), Expect = 3.365e-32
Identity = 14/23 (60.87%), Postives = 16/23 (69.57%), Query Frame = -1
Query:  610 KPMAMQKNTITAQNRKDPNQNTG 678
            +P+  Q N ITAQ R DP QNTG
Sbjct:  391 RPLKGQANVITAQGRADPFQNTG 413          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME16_ARATH (Probable pectinesterase/pectinesterase inhibitor 16 OS=Arabidopsis thaliana GN=PME16 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.435e-32
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = -2
Query:  246 TYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 542
            TYLGRPWK YSR V M +++G  I P GW  W+G F L +L+YGEY NSGPGS+V  RV+W G     + TEA KFTV+ FI G+ WLPSTGV+F  GL
Sbjct:  418 TYLGRPWKEYSRTVVMQSFIGGSIHPSGWSPWSGGFGLKSLFYGEYGNSGPGSSVSGRVKWSGCHPSLTVTEAEKFTVASFIDGNIWLPSTGVSFDPGL 516          

HSP 2 Score: 32.7278 bits (73), Expect = 7.435e-32
Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = -1
Query:  610 KPMAMQKNTITAQNRKDPNQNTG 678
            KP+  Q+N +TAQ R +P QNTG
Sbjct:  382 KPLPGQRNFVTAQGRSNPGQNTG 404          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.058e-31
Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = -2
Query:  258 ISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAF 608
            ISI    + AAPDL   + +   YLGRPW+LYSR V M +++ D + P GWL+W  DFAL+TLYYGEYMN GPGS + +RV+WPG++ I +  EAS+F+V  FI G+ WL ST + F
Sbjct:  398 ISIISSRILAAPDLIPVQANFKAYLGRPWQLYSRTVIMKSFIDDLVDPAGWLKWKDDFALETLYYGEYMNEGPGSNMTNRVQWPGFKRIETVEEASQFSVGPFIDGNKWLNSTRIPF 514          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME24_ARATH (Putative pectinesterase/pectinesterase inhibitor 24 OS=Arabidopsis thaliana GN=PME24 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.716e-31
Identity = 58/121 (47.93%), Postives = 77/121 (63.64%), Query Frame = -2
Query:  246 ISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 608
            ISIH C++    DL      + T+LGRPWK +S  V M +Y+   I  +GWL W GD A DT++YGEY N+GPG++  +RV+W G R + S  EA++FTV  FI G  WLP+T V F  GL
Sbjct:  446 ISIHRCNISPLGDLT----DVMTFLGRPWKNFSTTVIMDSYLHGFIDRKGWLPWTGDSAPDTIFYGEYKNTGPGASTKNRVKWKGLRFL-STKEANRFTVKPFIDGGRWLPATKVPFRSGL 561          

HSP 2 Score: 37.3502 bits (85), Expect = 4.716e-31
Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = -1
Query:  610 KPMAMQKNTITAQNRKDPNQNTG 678
            +PM  Q+NTITAQ R DPN NTG
Sbjct:  423 RPMKGQQNTITAQGRTDPNMNTG 445          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME38_ARATH (Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.359e-30
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = -2
Query:  258 RTRAISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAF 620
            +T  I IH+  +  AP +Q   G + TYLGRPW+ Y+R V + TY+   I+P GW++W+   AL TLYYGEY NSGPGS   +RV W G+ VI+   EA +FT+ +FI  +SWLP T V F
Sbjct:  352 QTTGIVIHNSVVKGAPGVQL--GGVKTYLGRPWRSYARTVVIGTYLDTLIEPNGWIDWDNVTALSTLYYGEYQNSGPGSGTENRVDWAGFHVISDIQEAREFTLPKFIDSASWLPPTKVPF 470          

HSP 2 Score: 28.4906 bits (62), Expect = 1.359e-30
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -1
Query:  610 NTITAQNRKDPNQNTG 657
            NTITAQ+R +PNQ TG
Sbjct:  340 NTITAQSRFNPNQTTG 355          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.174e-29
Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = -2
Query:  246 IHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 602
            +  C++   PD  A K    TYLGRPWK YSR + M T++ D + P GW  W G+F L+TL+Y E  N+GPG+A+  RV WPG + + S  E  KFT +Q+I G +W+P  GV ++ GL
Sbjct:  445 LQGCTIVGEPDYLAVKEQSKTYLGRPWKEYSRTIIMNTFIPDFVPPEGWQPWLGEFGLNTLFYSEVQNTGPGAAITKRVTWPGIKKL-SDEEILKFTPAQYIQGDAWIPGKGVPYILGL 562          

HSP 2 Score: 28.1054 bits (61), Expect = 4.174e-29
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = -1
Query:  610 KPMAMQKNTITAQNRKDPNQNTG 678
            KP+  Q   ITA  RKDP ++TG
Sbjct:  420 KPLLNQACPITAHGRKDPRESTG 442          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.085e-29
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = -2
Query:  246 CSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 593
            C++   PD  A K +   YLGRPWK YSR + M T++ D +QP+GW  W GDF L TL+Y E  N+GPGSA+ +RV W G + + S  +  KFT +Q+I G  W+P  GV +  GL
Sbjct:  451 CTIAGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVQPQGWQPWLGDFGLKTLFYSEVQNTGPGSALANRVTWAGIKTL-SEEDILKFTPAQYIQGDDWIPGKGVPYTTGL 565          

HSP 2 Score: 28.1054 bits (61), Expect = 7.085e-29
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = -1
Query:  610 KPMAMQKNTITAQNRKDPNQNTG 678
            KP+  Q   ITA  RKDP ++TG
Sbjct:  423 KPLPNQACPITAHGRKDPRESTG 445          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.868e-28
Identity = 59/133 (44.36%), Postives = 84/133 (63.16%), Query Frame = -2
Query:  246 GKT-LIRTRAISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWN--GDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 635
            G+T L +   ISIH+  +  APDL+    S+ TY+GRPW +YSR V + TY+   + P GW  W     + LDTL+Y EY N GP S+   RVRW G+ V++ A++AS F+V +FI G++WLP +G+ F   L
Sbjct:  408 GRTDLFQNTGISIHNSIIIPAPDLKPVVRSVKTYMGRPWMMYSRTVVLKTYIDSVVSPVGWSPWTKGSTYGLDTLFYAEYKNIGPASSTRWRVRWKGFHVLSKASDASAFSVGKFIAGTAWLPGSGIPFTSEL 540          
The following BLAST results are available for this feature:
BLAST of CN181867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PME33_ARATH4.061e-3352.03Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME39_ARATH5.610e-3356.41Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME59_ARATH3.365e-3247.15Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME16_ARATH7.435e-3258.59Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME40_ARATH1.058e-3152.99Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME24_ARATH4.716e-3147.93Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME38_ARATH1.359e-3048.76Putative pectinesterase/pectinesterase inhibitor 3... [more]
PME28_ARATH4.174e-2945.38Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME21_ARATH7.085e-2946.55Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME60_ARATH1.868e-2844.36Probable pectinesterase/pectinesterase inhibitor 6... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001J14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181867 ID=CN181867; Name=CN181867; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTCTTTTAAGACCGTCACAAATATTATTACTTATC
ACAACATCAAGACGAAAAAAATGAAACCAGAAAATTATACAATTGCGAAA
GAAATATTTAGAATTTAACCTCCCCGTGTGTGTGTGTGCATGCAGTAAGT
AAAATTCCATTTGATCCTTCCAACACTCATGAGACCCACCTATATATAAT
AAGTATACGTACTAAAAAGTTAAATTAAAATTCACTTTAAACCGAAAGCC
CACCCAAGAAAGCCACCCCAGTCGACGGCAGCCACGACGACCCGTAGATA
AACTGCGACACAGTGAATTTACTTGCCTCCGTCGCCGACGTTATAACCCG
GTAACCCGGCCACCTCACCCGGTGCCCCACGGCCGAACCCGGGCCGGAGT
TCATGTACTCGCCGTAGTATAAAGTATCCAGTGCAAAGTCTCCATTCCAT
TCAAGCCAGCCTCTGGGTTGGATGTGGTCACCCATGTACGTTAACATGTA
CACAACCCTCGAGTAGAGCTTCCACGGCCGGCCTAGGTACGTGGGGATGC
TGCCTTTCGAGGCCTGAAGATCGGGGGCGGCGTAAAGGCTGCAGTCGTGG
ATTGAGATGGCCCGTGTTCTGATTAGGGTCTTTCCTGTTCTGCGCCGTGA
TGGTGTTCTTCTGCATGGCCATCGGCTT
back to top