CN181867

Overview
NameCN181867
Unique NameCN181867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.682e-27
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = -2
Query:  264 RTRAISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEW-NGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGV 620
            ++  +SI  C++ A  ++ A     PTYLGRPWK +S  V M T +G  ++P GW+ W +G     ++ YGEY N+GPGS V  RV+W GY+ + S  EA+KFTV+  ++G+ W+P+TGV
Sbjct:  467 QSSGMSIQRCTISANGNVIA-----PTYLGRPWKEFSTTVIMETVIGAVVRPSGWMSWVSGVDPPASIVYGEYKNTGPGSDVTQRVKWAGYKPVMSDAEAAKFTVATLLHGADWIPATGV 581          

HSP 2 Score: 35.039 bits (79), Expect = 1.682e-27
Identity = 14/23 (60.87%), Postives = 20/23 (86.96%), Query Frame = -1
Query:  610 KPMAMQKNTITAQNRKDPNQNTG 678
            +P++ Q NTITAQ +KDPNQ++G
Sbjct:  448 QPLSNQFNTITAQGKKDPNQSSG 470          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.684e-27
Identity = 56/121 (46.28%), Postives = 77/121 (63.64%), Query Frame = -2
Query:  246 ISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 608
            IS+ +CS+ A+ DL  S   + +YLGRPW+ +SR V M +Y+ + I   GW +WNG  ALDTLYYGEY N+GPGS    RV WPG+ ++    +A  FT ++FI G  WL ST   +  G+
Sbjct:  428 ISMQNCSILASEDLFNSSNKVKSYLGRPWREFSRTVVMESYIDEFIDGSGWSKWNGGEALDTLYYGEYNNNGPGSETVKRVNWPGFHIM-GYEDAFNFTATEFITGDGWLGSTSFPYDNGI 547          

HSP 2 Score: 22.3274 bits (46), Expect = 1.684e-27
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = -1
Query:  610 PMAMQKNTITAQNRKDPNQNTG 675
            PM  Q   ITAQ+R   +++TG
Sbjct:  406 PMPGQFTVITAQSRDTQDEDTG 427          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME58_ARATH (Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.712e-27
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = -2
Query:  252 IHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLG 602
            + +C +   P     K     YLGRPWK +SR + M T + D I P GWL WNGDFAL+TLYY EY N+GPGS    RV+WPG + + S  +A +FT ++F+ G+ W+P   V ++G
Sbjct:  453 LQNCHITGEPAYIPVKSINKAYLGRPWKEFSRTIIMGTTIDDVIDPAGWLPWNGDFALNTLYYAEYENNGPGSNQAQRVKWPGIKKL-SPKQALRFTPARFLRGNLWIPPNRVPYMG 568          

HSP 2 Score: 26.9498 bits (58), Expect = 3.712e-27
Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = -1
Query:  610 KPMAMQKNTITAQNRKDPNQNTG 678
            KPM  Q   ITAQ R D  ++TG
Sbjct:  428 KPMKSQSCMITAQGRSDKRESTG 450          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.934e-25
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = -2
Query:  267 RTRAISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEW-NGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTG 620
            +T    IH+C++    DL+  K    +YLGRPWK +SR V M + + D I P GWL W   DFA+DTL Y EY N GP  A   RV+WPG+RV+ +  EA KFTV  F+ G  W+ + G
Sbjct:  483 QTTGFVIHNCTVAPNEDLKPVKAQFKSYLGRPWKPHSRTVVMESTIEDVIDPVGWLRWQETDFAIDTLSYAEYKNDGPSGATAARVKWPGFRVL-NKEEAMKFTVGPFLQG-EWIQAIG 599          

HSP 2 Score: 27.7202 bits (60), Expect = 1.934e-25
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = -1
Query:  610 KPMAMQKNTITAQNRKDPNQNTG 678
            K +  QKNT+TAQ R D  Q TG
Sbjct:  464 KGLPGQKNTVTAQGRVDKFQTTG 486          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME19_ARATH (Probable pectinesterase/pectinesterase inhibitor 19 OS=Arabidopsis thaliana GN=PME19 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.306e-25
Identity = 47/120 (39.17%), Postives = 77/120 (64.17%), Query Frame = -2
Query:  246 SIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 605
            +I  C++ A+ DL  +  ++ TYLGRPW+++S V  M +++GD + P GW  W G+  L TL+Y EY N GPG+    RV+W G++V+    +A++FTV++ + G +WL  T + +  GL
Sbjct:  407 TIQKCNITASSDLDTT--TVKTYLGRPWRIFSTVAVMQSFIGDLVDPAGWTPWEGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFTVAKLLDGETWLKETRIPYESGL 524          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME42_ARATH (Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.623e-25
Identity = 46/120 (38.33%), Postives = 78/120 (65.00%), Query Frame = -2
Query:  246 SIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 605
            SI +C++ A+ DL  +  ++ TYLGRPW+++S V  + +++GD + P GW  W G+  L TL+Y EY N GPG+    RV+W G++V+    +A++FTV++ + G +WL  + + +  GL
Sbjct:  407 SIQNCNITASSDLDTA--TVKTYLGRPWRIFSTVAVLQSFIGDLVDPAGWTPWEGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKQATEFTVAKLLDGETWLKESRIPYKSGL 524          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.623e-25
Identity = 54/127 (42.52%), Postives = 77/127 (60.63%), Query Frame = -2
Query:  258 GKTLIR-TRAISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAF 635
            G++ +R +  + +H C +   P     K     YLGRPWK +SR + M T + D I P GWL W+GDFAL TLYY E+MN+GPGS    RV+WPG + +T   +A  +T  +F+ G +W+P T V +
Sbjct:  439 GRSNVRESTGLVLHGCHITGDPAYIPMKSVNKAYLGRPWKEFSRTIIMKTTIDDVIDPAGWLPWSGDFALKTLYYAEHMNTGPGSNQAQRVKWPGIKKLT-PQDALLYTGDRFLRGDTWIPQTQVPY 564          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 9.326e-25
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = -2
Query:  276 ISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALD--TLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYG-SSWLP 608
            ISIH C++    ++ A+     TYLGRPWKL+S+ V M + +G  + P GW+ WN  +     T++Y EY NSGPGS +  RV+W GY+ I+S  EA++FTV  F+ G  +W+P
Sbjct:  851 ISIHQCTISPNGNVTAT-----TYLGRPWKLFSKTVIMQSVIGSFVNPAGWIAWNSTYDPPPRTIFYREYKNSGPGSDLSKRVKWAGYKPISSDDEAARFTVKYFLRGDDNWIP 959          

HSP 2 Score: 29.261 bits (64), Expect = 9.326e-25
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = -1
Query:  610 KPMAMQKNTITAQNRKDPNQNTG 678
            +P+  Q NTITA+  ++ NQNTG
Sbjct:  828 QPLPNQFNTITAEGTQEANQNTG 850          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.072e-24
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = -2
Query:  258 PTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDT-LYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAF 545
            PTYLGRPWK +S  V M + +G  + P GW+ W  +    T ++Y EY NSGPG+ V  RV+W GY+   +   A +FTV  FI G  WLP+  V F
Sbjct:  481 PTYLGRPWKDFSTTVIMQSDIGALLNPVGWMSWVPNVEPPTTIFYAEYQNSGPGADVSQRVKWAGYKPTITDRNAEEFTVQSFIQGPEWLPNAAVQF 577          

HSP 2 Score: 37.7354 bits (86), Expect = 2.072e-24
Identity = 16/23 (69.57%), Postives = 19/23 (82.61%), Query Frame = -1
Query:  610 KPMAMQKNTITAQNRKDPNQNTG 678
            +P+  Q NTITAQ +KDPNQNTG
Sbjct:  441 QPLPNQFNTITAQGKKDPNQNTG 463          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME30_ARATH (Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.120e-24
Identity = 45/120 (37.50%), Postives = 76/120 (63.33%), Query Frame = -2
Query:  246 SIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 605
            SI +C++  + DL  +  ++ TYLGRPW+ +S V  + +++GD + P GW  W G+  L TL+Y EY N GPG+    RV+W G++V+    +A++FTV++ + G +WL  + + +  GL
Sbjct:  380 SIQNCNITTSSDLDTA--TVKTYLGRPWRRFSTVAVLQSFIGDLVDPAGWTPWKGETGLSTLHYREYQNRGPGAVTSRRVKWSGFKVMKDPKKATEFTVAKLLDGETWLKESRIPYESGL 497          
The following BLAST results are available for this feature:
BLAST of CN181867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PME1_ARATH1.682e-2743.33Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME12_ARATH1.684e-2746.28Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME58_ARATH3.712e-2745.30Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME45_ARATH1.934e-2546.22Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME19_ARATH4.306e-2539.17Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME42_ARATH5.623e-2538.33Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME23_ARATH5.623e-2542.52Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME26_ARATH9.326e-2543.86Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME3_PHAVU2.072e-2445.36Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME30_ARATH8.120e-2437.50Probable pectinesterase 30 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001J14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181867 ID=CN181867; Name=CN181867; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTCTTTTAAGACCGTCACAAATATTATTACTTATC
ACAACATCAAGACGAAAAAAATGAAACCAGAAAATTATACAATTGCGAAA
GAAATATTTAGAATTTAACCTCCCCGTGTGTGTGTGTGCATGCAGTAAGT
AAAATTCCATTTGATCCTTCCAACACTCATGAGACCCACCTATATATAAT
AAGTATACGTACTAAAAAGTTAAATTAAAATTCACTTTAAACCGAAAGCC
CACCCAAGAAAGCCACCCCAGTCGACGGCAGCCACGACGACCCGTAGATA
AACTGCGACACAGTGAATTTACTTGCCTCCGTCGCCGACGTTATAACCCG
GTAACCCGGCCACCTCACCCGGTGCCCCACGGCCGAACCCGGGCCGGAGT
TCATGTACTCGCCGTAGTATAAAGTATCCAGTGCAAAGTCTCCATTCCAT
TCAAGCCAGCCTCTGGGTTGGATGTGGTCACCCATGTACGTTAACATGTA
CACAACCCTCGAGTAGAGCTTCCACGGCCGGCCTAGGTACGTGGGGATGC
TGCCTTTCGAGGCCTGAAGATCGGGGGCGGCGTAAAGGCTGCAGTCGTGG
ATTGAGATGGCCCGTGTTCTGATTAGGGTCTTTCCTGTTCTGCGCCGTGA
TGGTGTTCTTCTGCATGGCCATCGGCTT
back to top