CN181867

Overview
NameCN181867
Unique NameCN181867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.005e-23
Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = -2
Query:  267 RTRAISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEW-NGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTG 620
            +T    +H+C + A  DL+  K    +YLGRPWK YSR + M + + + I P GWL W   DFA+DTLYY EY N G       RV+WPG++VI +  EA  +TV  F+ G  W+ ++G
Sbjct:  488 QTTGFVVHNCKIAANEDLKPVKEEYKSYLGRPWKNYSRTIIMESKIENVIDPVGWLRWQETDFAIDTLYYAEYNNKGSSGDTTSRVKWPGFKVI-NKEEALNYTVGPFLQG-DWISASG 604          

HSP 2 Score: 27.7202 bits (60), Expect = 1.005e-23
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = -1
Query:  610 KPMAMQKNTITAQNRKDPNQNTG 678
            K +  QKNT+TAQ R D  Q TG
Sbjct:  469 KGLPGQKNTVTAQGRVDKFQTTG 491          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME43_ARATH (Putative pectinesterase/pectinesterase inhibitor 43 OS=Arabidopsis thaliana GN=PME43 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.072e-22
Identity = 50/120 (41.67%), Postives = 67/120 (55.83%), Query Frame = -2
Query:  258 TRAISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAF 617
            T  I IH+  +         K     +LGRPWK +SR + M T + D I P GWL+WN  FAL+TL+Y EY N G GS  G RVRW G + I S   A +F    F+ G++W+P T + +
Sbjct:  580 TTGIVIHNSRITGDASYLPVKAKNRAFLGRPWKEFSRTIIMNTEIDDVIDPEGWLKWNETFALNTLFYTEYRNRGRGSGQGRRVRWRGIKRI-SDRAAREFAPGNFLRGNTWIPQTRIPY 698          

HSP 2 Score: 26.5646 bits (57), Expect = 1.072e-22
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = -1
Query:  610 KPMAMQKNTITAQNRKDPNQNTG 678
            +PM  Q+  +TAQ RKD  + TG
Sbjct:  560 RPMEHQQCIVTAQGRKDRRETTG 582          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME_PETIN (Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19
Identity = 48/128 (37.50%), Postives = 68/128 (53.12%), Query Frame = -2
Query:  246 IRTRAISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWN-GDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYG-SSWLPSTGVAFLGGL 623
            I+  AI + +C +    D  +      TYLGRPWK YSR + M +Y+   I+P GW  WN  +F  DT YY EY N GPG+A+  R+ W G++   +   A KFT   +I    +WL    V +  G+
Sbjct:  244 IQKGAIVLQNCEIKPDTDYFSLSPPSKTYLGRPWKEYSRTIIMQSYIDKFIEPEGWAPWNITNFGRDTSYYAEYQNRGPGAALDKRITWKGFQKGFTGEAAQKFTAGVYINNDENWLQKANVPYEAGM 371          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.136e-17
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = -2
Query:  246 ISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 608
            I +H+C +    +L+A K +I +YLGRPWK ++  V + T +GD I+P GW EW G+    T  Y E+ N GPG+A   R  W   +V  SA E   +TV+ ++  ++W+    V    GL
Sbjct:  470 IVLHNCRIIPDKELEADKLTIKSYLGRPWKKFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPW--VKVAKSAAEVETYTVANWVGPANWIQEANVPVQLGL 588          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.913e-17
Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = -2
Query:  270 DLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPST 572
            + QA+      +LGRPWK +SR V++   +   I P GW+ WNGDFAL TLYYGEY N+GPGS    RV W              ++V+ FI    W  +T
Sbjct:  504 EFQANPEGHKNFLGRPWKEFSRTVFVNCNLESLISPDGWMPWNGDFALKTLYYGEYKNTGPGSVRSSRVPWSSE---IPEKHVDVYSVANFIQADEWASTT 601          

HSP 2 Score: 21.557 bits (44), Expect = 1.913e-17
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = -1
Query:  610 NTITAQNRKDPNQNTG 657
            N ITA  R D +Q+TG
Sbjct:  472 NAITAHGRIDASQSTG 487          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = -2
Query:  246 ISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 608
            I +H+C + A  +L+A + ++ +YLGRPWK ++    + T +GD IQP GW EW G+    T  Y E+ N GPG+    RV W   ++  SA E  +FTV+ ++  ++W+    V    GL
Sbjct:  466 IVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANTAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVPVQLGL 584          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = -2
Query:  246 ISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 608
            I +H+C + A  +L+A + ++ +YLGRPWK ++    + T +GD IQP GW EW G+    T  Y E+ N GPG+    RV W   ++  SA E  +FTV+ ++  ++W+    V    GL
Sbjct:  453 IVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVTVQLGL 571          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.211e-17
Identity = 39/86 (45.35%), Postives = 48/86 (55.81%), Query Frame = -2
Query:  282 YLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSW 539
            +LGRPWK YSR V++   +   I P GWL W+GDFAL TLYYGE  N+GPGS    RV W              ++V+ FI    W
Sbjct:  464 FLGRPWKDYSRTVFIGCNLEALITPDGWLPWSGDFALKTLYYGESKNTGPGSDRSQRVSWSSQ---IPDEHVHVYSVANFIQADEW 546          

HSP 2 Score: 29.261 bits (64), Expect = 4.211e-17
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = -1
Query:  610 PMAMQKNTITAQNRKDPNQNTG 675
            P   +KN +TAQ R DP+Q+TG
Sbjct:  415 PEKGEKNAVTAQGRIDPSQSTG 436          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = -2
Query:  246 ISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 608
            I + +C +     L   + ++ TYLGRPWK +S  V M T MGD I+P GW  W+G+    +  Y EY N GPG+    RV W   +V  SA E + FT + ++   +W+    V    GL
Sbjct:  470 IVLQNCRIVPDRKLTPERLTVATYLGRPWKKFSTTVIMSTEMGDLIRPEGWKIWDGESFHKSCRYVEYNNRGPGAFANRRVNWA--KVARSAAEVNGFTAANWLGPINWIQEANVPVTIGL 588          
BLAST of CN181867 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15
Identity = 41/101 (40.59%), Postives = 57/101 (56.44%), Query Frame = -2
Query:  309 SIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEW--NGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTV 605
            ++H C +    DL   K    +YLGRPW+ YSR + M +Y+ D I   GW  W  +GD  L TLY+GE+ N GP + +  RV W G+  I    EA+ F+V
Sbjct:  390 ALHSCRIRTDSDLSPVKHKYSSYLGRPWRKYSRAIVMESYIDDAIAEGGWAGWLDSGDEVLKTLYFGEFKNYGPKARISKRVTWEGFHSI-GFEEANYFSV 489          
The following BLAST results are available for this feature:
BLAST of CN181867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
PME13_ARATH1.005e-2342.86Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME43_ARATH1.072e-2241.67Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME_PETIN1.213e-1937.50Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=... [more]
PME37_ARATH1.136e-1737.19Probable pectinesterase/pectinesterase inhibitor V... [more]
PME64_ARATH1.913e-1741.58Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME_BRANA1.937e-1736.36Probable pectinesterase/pectinesterase inhibitor O... [more]
PME_BRACM2.530e-1736.36Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME51_ARATH4.211e-1745.35Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME4_ARATH3.653e-1636.36Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME54_ARATH1.388e-1540.59Probable pectinesterase/pectinesterase inhibitor 5... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181867 ID=CN181867; Name=CN181867; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTCTTTTAAGACCGTCACAAATATTATTACTTATC
ACAACATCAAGACGAAAAAAATGAAACCAGAAAATTATACAATTGCGAAA
GAAATATTTAGAATTTAACCTCCCCGTGTGTGTGTGTGCATGCAGTAAGT
AAAATTCCATTTGATCCTTCCAACACTCATGAGACCCACCTATATATAAT
AAGTATACGTACTAAAAAGTTAAATTAAAATTCACTTTAAACCGAAAGCC
CACCCAAGAAAGCCACCCCAGTCGACGGCAGCCACGACGACCCGTAGATA
AACTGCGACACAGTGAATTTACTTGCCTCCGTCGCCGACGTTATAACCCG
GTAACCCGGCCACCTCACCCGGTGCCCCACGGCCGAACCCGGGCCGGAGT
TCATGTACTCGCCGTAGTATAAAGTATCCAGTGCAAAGTCTCCATTCCAT
TCAAGCCAGCCTCTGGGTTGGATGTGGTCACCCATGTACGTTAACATGTA
CACAACCCTCGAGTAGAGCTTCCACGGCCGGCCTAGGTACGTGGGGATGC
TGCCTTTCGAGGCCTGAAGATCGGGGGCGGCGTAAAGGCTGCAGTCGTGG
ATTGAGATGGCCCGTGTTCTGATTAGGGTCTTTCCTGTTCTGCGCCGTGA
TGGTGTTCTTCTGCATGGCCATCGGCTT
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