CN181865

Overview
NameCN181865
Unique NameCN181865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:167..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.026e-40
Identity = 79/127 (62.20%), Postives = 100/127 (78.74%), Query Frame = -3
Query:  302 DHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 682
            D+ K  +LEL +K++ R++IF+ID           G P E+YDDFTASLP ++CRYAV+DFDF T+ENCQKSKIFFIAWSPD SR+R KM+YA+SKDRF+RELDGI  E+QATDPSEM  ++I+ RA
Sbjct:    2 DNCKLKFLEL-KKRIFRFIIFRIDGQQVVVEKL--GNPQETYDDFTASLPADECRYAVFDFDFTTNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 125          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.162e-40
Identity = 74/130 (56.92%), Postives = 98/130 (75.38%), Query Frame = -3
Query:  299 VADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 688
            + D  K +++E++ KKVHRYV++K++         K G   ESYDD  ASLP++DCRYAV+DFD+VT +NC+ SKIFFI WSP+ SRIR KM+YATSK   RR LDG+HYE+QATDP+EM  + I+DRA+
Sbjct:    1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRAK 130          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.804e-40
Identity = 76/132 (57.58%), Postives = 99/132 (75.00%), Query Frame = -3
Query:  305 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 700
            +GM V D  K  ++EL+ K+  R +++KI+           G P +SYDDF ASLP +DCRY +YDFDFVT+ENCQKSKIFFIAWSPD +++R KM+YA+SKDRF+RELDGI  E+QATDP+EM L+V + R
Sbjct:    6 SGMAVHDDCKLKFMELKAKRTFRTIVYKIEDKQVIVEKL--GEPEQSYDDFAASLPADDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSR 135          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.804e-40
Identity = 75/132 (56.82%), Postives = 96/132 (72.73%), Query Frame = -3
Query:  305 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 700
            +G+ V D  K  + EL+ ++  R+++F+ID         + G P + Y DFT SLP N+CRYA+YD DF T ENCQKSKIFF +WSPD +R R+KMLYA+SKDRFRRELDGI  EIQATDPSEM L+++R R
Sbjct:    6 SGLAVNDECKVKFRELKSRRTFRFIVFRIDDTDMEIKVDRLGEPNQGYGDFTDSLPANECRYAIYDLDFTTIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRSR 137          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.346e-39
Identity = 81/129 (62.79%), Postives = 98/129 (75.97%), Query Frame = -3
Query:  302 VADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 688
            V + SKS + EL R+KVHRYVIFKID         KTG P ESYDDFTASLP +    AVYD DFV+ +NC+KSKIFFI+WSP +S IRAK +YA  +++FR ELDG+H+EIQATDP +MDLEV+R RA
Sbjct:   19 VPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRA 143          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.453e-39
Identity = 71/133 (53.38%), Postives = 102/133 (76.69%), Query Frame = -3
Query:  302 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 700
            +GM V D  K  ++EL+ K+ HR++I+KI+         K G P ++++D  ASLP ++CRYA++DFDFV+SE   +S+IFF+AWSPD +R+R+KM+YA+SKDRF+RELDGI  E+QATDP+EMDL+V + RA
Sbjct:    6 SGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLPADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRA 138          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.271e-38
Identity = 72/132 (54.55%), Postives = 97/132 (73.48%), Query Frame = -3
Query:  305 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 700
            +G+ V+D  K  + +L+ ++  R+++F+ID         + G P + Y DFT SLP ++CRYA+YD DF T ENCQKSKIFF +WSPD +R R+KMLYA+SKDRFRRELDGI  EIQATDPSEM L++++ R
Sbjct:    6 SGLAVSDECKVKFRDLKARRSFRFIVFRIDDKDMEIKVDRLGEPNQGYGDFTDSLPADECRYAIYDLDFTTVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKSR 137          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.007e-35
Identity = 69/135 (51.11%), Postives = 98/135 (72.59%), Query Frame = -3
Query:  299 KTGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 703
            ++G+ V D     + ELQ K++HR++ FK+D         + G  A SYDDFT SLP+NDCRYA+YDFDFVT+E+ QKS+IF+I WSP  +++++KMLYA+S  +F+  L+GI  E+QATD SE+ L+ I+DRAR
Sbjct:    5 RSGVAVNDECMLKFGELQSKRLHRFITFKMDDKFKEIVVDQVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDRAR 139          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.527e-34
Identity = 63/134 (47.01%), Postives = 97/134 (72.39%), Query Frame = -3
Query:  299 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 700
            +G+ + D  K  + ELQ K++HR++ F +D         K G    SY+DFT+SLP+ DCR+A+YDFDF+T+E+  KS+IF+I WSPD +++R+KMLYA+S +RF++EL+GI  E+QATD  E+ L+ ++DR +
Sbjct:    6 SGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDRVK 139          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28
Identity = 58/142 (40.85%), Postives = 91/142 (64.08%), Query Frame = -3
Query:  308 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSE-----------NCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRD 700
            +G+ V++  K+ + EL+  + HR+V+FKID         + G     +D+ TASLP + CRYAVYD DF  S+              +SKIFF++WSP  + +R+KM+YA+S + F++ELDG+  ++QATDPSE+ L+V++D
Sbjct:    6 SGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADGCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKD 147          
The following BLAST results are available for this feature:
BLAST of CN181865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ADF_BRANA3.026e-4062.20Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF9_ARATH5.162e-4056.92Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF2_ARATH8.804e-4057.58Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
ADF1_MAIZE8.804e-4056.82Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF8_ORYSJ3.346e-3962.79Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ADF3_ARATH7.453e-3953.38Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF2_MAIZE1.271e-3854.55Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF3_MAIZE1.007e-3551.11Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF4_ORYSJ5.527e-3447.01Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]
ADF3_ORYSJ5.919e-2840.85Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181865 ID=CN181865; Name=CN181865; organism=Citrus sinensis; type=EST; length=708bp
CCCTTTTTTTTTCTATTAGAATACCCATTTCATTAAGCAAAGTCGAACAG
CATAAGTATCCATGTCTATGTCCAATTTTACCTGAGAAGCATCATGGCAA
TAGAGAGCCCGTGTCCTCTGGCATCGCAGTGCCTCAGCCATGAGCTCGTT
ATCAGCCTTCTCAGGTGCTGATTATTTAACAATAGCTATATGTACTATGT
GCCACACAAATACGGCAACTAATTGGAGGACAGTTTGTGCCTTCAGACCA
CAAATGCAGTCTCAAGGAAACAAATTCTTTTCCTTCAGGGCATTCTCAGC
GTGCACGGTCTCTGATCACCTCAAGATCCATCTCACTTGGGTCAGTTGCC
TGAATTTCATAGTGGATGCCGTCCAGCTCCCTCCTGAACCTGTCCTTTGA
TGTTGCATACAGCATCTTAGCTCGGATTCGGGACACGTCAGGAGACCATG
CAATGAAAAAGATCTTGCTTTTCTGACAATTCTCTGAGGTCACAAAATCA
AAGTCATAAACTGCATAACGACAGTCATTATCCGGCAAAGATGCAGTGAA
ATCGTCATAGCTCTCAGCTGGGCCTCCAGTCTTTTCAACCACTACCTCCT
TTTTCTTCTCATCAATCTTAAAAATCACATACCGATGTACTTTCTTCCTC
TGCAACTCTAGGTATGTGCTCTTGCTGTGATCAGCAACTCCCATTCCAGT
TTTTTTTT
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