CN181865

Overview
NameCN181865
Unique NameCN181865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 49/132 (37.12%), Postives = 80/132 (60.61%), Query Frame = -3
Query:  305 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 700
            +G+ V+      + EL+  K  +Y+I+ ++          T   + SYDDF A LP  +CRYA+YDF++   +  +++KI F +WSPD ++I+ KM++A+SKD  R+ L GI  EIQ TD SE+  + + D+
Sbjct:    3 SGVKVSQECLDKFQELKLGKKIKYIIYSLNDKNTEIVVQNTS-TSTSYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYDTVLDK 133          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 53/132 (40.15%), Postives = 80/132 (60.61%), Query Frame = -3
Query:  305 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 700
            +G+ V+      + EL+  K  RYV+FK++         K     + +D F   LP+ DCRYA+YDF+F   E   ++KI FI+WSPDV+ I++KM+Y++SKD  RR   GI  +IQATD SE+  E + ++
Sbjct:    4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKD-FDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEK 133          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 51/142 (35.92%), Postives = 82/142 (57.75%), Query Frame = -3
Query:  299 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPD---NDCRYAVYDFDFV-----TSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 700
            +G+ V+D  K+TY E+++ K HRYVIF I               AE YD F   +      +CRY ++DF+++     TSE+ +K K+F ++W PD ++++ KMLY++S D  ++ L G+   IQATD SE   E + ++ R
Sbjct:    3 SGVTVSDVCKTTYEEIKKDKKHRYVIFYIRDEKQIDVETVADRNAE-YDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEKLR 143          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 47/124 (37.90%), Postives = 72/124 (58.06%), Query Frame = -3
Query:  329 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEM 700
            +G+ +A +  ST+ +L+  + +  +I++I           T     S+D+FT  LP+N+CRY V D+ +   E  QKSKI F+AW PD + I+ KM+  +SKD  R+   GI  EIQ TD SE+
Sbjct:    3 SGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEV 125          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 42/89 (47.19%), Postives = 63/89 (70.79%), Query Frame = -3
Query:  302 ESYDDFTASLPDNDCRYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 565
            + +D F A LP+ DCR+AVYDF+F +      ++K+ FI WSPD + ++ KM++A+SK+  RR LDGIH EIQATD SE+  + + ++A
Sbjct:   47 KDFDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDALFEKA 135          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 31/87 (35.63%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  305 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 565
            + +  F   LP+ DCRYA+YD  F T E+ +K ++ F  W+P+++ +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 31/87 (35.63%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  305 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 565
            + +  F   LP+ DCRYA+YD  F T E+ +K ++ F  W+P+++ +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 31/87 (35.63%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  305 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 565
            + +  F   LP+ DCRYA+YD  F T E+ +K ++ F  W+P+++ +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 31/89 (34.83%), Postives = 59/89 (66.29%), Query Frame = -3
Query:  299 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 565
            ES++D+    P +DCRY VYDF ++ ++  +K+KIFFI+W P  ++I+ K+++  ++    ++L GI   I+ATD +E+   ++ +R +
Sbjct:   47 ESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEISQSLVEERCK 135          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 31/87 (35.63%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  305 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 565
            + +  F   LP+ DCRYA+YD  F T E+ +K ++ F  W+P+ + +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLNRTCIAEK 151          
The following BLAST results are available for this feature:
BLAST of CN181865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
COFI_USTMA1.561e-2037.12Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_SCHPO3.478e-2040.15Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
CADF_DROME3.846e-1935.92Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
COF1_DICDI5.553e-1837.90Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
COFI_CRYNE7.253e-1847.19Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
DEST_PIG1.415e-1335.63Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_HUMAN1.415e-1335.63Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]
DEST_BOVIN1.415e-1335.63Destrin OS=Bos taurus GN=DSTN PE=2 SV=3[more]
COF4_DICDI3.153e-1334.83Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]
DEST_MOUSE4.118e-1335.63Destrin OS=Mus musculus GN=Dstn PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181865 ID=CN181865; Name=CN181865; organism=Citrus sinensis; type=EST; length=708bp
CCCTTTTTTTTTCTATTAGAATACCCATTTCATTAAGCAAAGTCGAACAG
CATAAGTATCCATGTCTATGTCCAATTTTACCTGAGAAGCATCATGGCAA
TAGAGAGCCCGTGTCCTCTGGCATCGCAGTGCCTCAGCCATGAGCTCGTT
ATCAGCCTTCTCAGGTGCTGATTATTTAACAATAGCTATATGTACTATGT
GCCACACAAATACGGCAACTAATTGGAGGACAGTTTGTGCCTTCAGACCA
CAAATGCAGTCTCAAGGAAACAAATTCTTTTCCTTCAGGGCATTCTCAGC
GTGCACGGTCTCTGATCACCTCAAGATCCATCTCACTTGGGTCAGTTGCC
TGAATTTCATAGTGGATGCCGTCCAGCTCCCTCCTGAACCTGTCCTTTGA
TGTTGCATACAGCATCTTAGCTCGGATTCGGGACACGTCAGGAGACCATG
CAATGAAAAAGATCTTGCTTTTCTGACAATTCTCTGAGGTCACAAAATCA
AAGTCATAAACTGCATAACGACAGTCATTATCCGGCAAAGATGCAGTGAA
ATCGTCATAGCTCTCAGCTGGGCCTCCAGTCTTTTCAACCACTACCTCCT
TTTTCTTCTCATCAATCTTAAAAATCACATACCGATGTACTTTCTTCCTC
TGCAACTCTAGGTATGTGCTCTTGCTGTGATCAGCAACTCCCATTCCAGT
TTTTTTTT
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