CN181865

Overview
NameCN181865
Unique NameCN181865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 31/87 (35.63%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  305 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 565
            + +  F   LP+ DCRYA+YD  F T E+ +K ++ F  W+P+ + +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVEMLPEKDCRYALYDASFETKES-KKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 31/87 (35.63%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  305 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 565
            + +  F   LP+ DCRYA+YD  F T E+ +K ++ F  W+P+ + +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLNRTSIAEK 151          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: CADF2_PLAFX (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate HB3) PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = -3
Query:  299 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKT-GGPAESYDDFTASLPDN----DCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 700
            +G+ V+D     + +L+ K +H+Y+I++I+                +SY D    + +N    +CRY + D    T E   +++I+FI WSPD+++ + KMLYA+SK+   R+++GI   ++ T     DLE   D  R
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYEEVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEIT----CDLEDFEDELR 137          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: CADF2_PLAF7 (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0326 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = -3
Query:  299 TGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXKT-GGPAESYDDFTASLPDN----DCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 700
            +G+ V+D     + +L+ K +H+Y+I++I+                +SY D    + +N    +CRY + D    T E   +++I+FI WSPD+++ + KMLYA+SK+   R+++GI   ++ T     DLE   D  R
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYEEVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEIT----CDLEDFEDELR 137          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF1_SHEEP (Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  347 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 565
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF1_RAT (Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  347 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 565
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF1_PIG (Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  347 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 565
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF1_MACFA (Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  347 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 565
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  347 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 565
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF1_MOUSE (Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  347 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 565
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
The following BLAST results are available for this feature:
BLAST of CN181865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
DEST_CHICK4.118e-1335.63Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3[more]
DEST_RAT5.379e-1335.63Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3[more]
CADF2_PLAFX5.379e-1330.22Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]
CADF2_PLAF75.379e-1330.22Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]
COF1_SHEEP1.198e-1243.84Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3[more]
COF1_RAT1.198e-1243.84Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3[more]
COF1_PIG1.198e-1243.84Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3[more]
COF1_MACFA1.198e-1243.84Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3[more]
COF1_BOVIN1.198e-1243.84Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]
COF1_MOUSE1.565e-1243.84Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181865 ID=CN181865; Name=CN181865; organism=Citrus sinensis; type=EST; length=708bp
CCCTTTTTTTTTCTATTAGAATACCCATTTCATTAAGCAAAGTCGAACAG
CATAAGTATCCATGTCTATGTCCAATTTTACCTGAGAAGCATCATGGCAA
TAGAGAGCCCGTGTCCTCTGGCATCGCAGTGCCTCAGCCATGAGCTCGTT
ATCAGCCTTCTCAGGTGCTGATTATTTAACAATAGCTATATGTACTATGT
GCCACACAAATACGGCAACTAATTGGAGGACAGTTTGTGCCTTCAGACCA
CAAATGCAGTCTCAAGGAAACAAATTCTTTTCCTTCAGGGCATTCTCAGC
GTGCACGGTCTCTGATCACCTCAAGATCCATCTCACTTGGGTCAGTTGCC
TGAATTTCATAGTGGATGCCGTCCAGCTCCCTCCTGAACCTGTCCTTTGA
TGTTGCATACAGCATCTTAGCTCGGATTCGGGACACGTCAGGAGACCATG
CAATGAAAAAGATCTTGCTTTTCTGACAATTCTCTGAGGTCACAAAATCA
AAGTCATAAACTGCATAACGACAGTCATTATCCGGCAAAGATGCAGTGAA
ATCGTCATAGCTCTCAGCTGGGCCTCCAGTCTTTTCAACCACTACCTCCT
TTTTCTTCTCATCAATCTTAAAAATCACATACCGATGTACTTTCTTCCTC
TGCAACTCTAGGTATGTGCTCTTGCTGTGATCAGCAACTCCCATTCCAGT
TTTTTTTT
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