CN181865

Overview
NameCN181865
Unique NameCN181865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:167..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF1_HUMAN (Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = -3
Query:  347 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 565
            + Y  F   LPD DCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  302 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 565
            + Y  F   LP NDCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++  GI +E Q        L+ I+DR+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  302 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 565
            + Y  F   LP NDCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++  GI +E Q        L+ I+DR+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF2_HUMAN (Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  302 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 565
            + Y  F   LP NDCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++  GI +E Q        L+ I+DR+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF2_BOVIN (Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  302 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 565
            + Y  F   LP NDCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++  GI +E Q        L+ I+DR+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 40/131 (30.53%), Postives = 73/131 (55.73%), Query Frame = -3
Query:  314 STYLELQRKKVHRYVIFKIDXXXXXXXXXKTGGPAESYDDFTASLPDNDC-----------RYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVI 670
            + + +L+  K ++++++K+          K    +  ++DF  +L +              RYAVYDF++ + S +  ++KI FIAWSPD + I+ KM+YA+SK+  +R L GI  E+QA D  +++ + I
Sbjct:    5 TAFNDLKLNKKYKFIVYKLSDDYKEIVIDKAS-ESRDWEDFRETLVNATAKSRTGAVGKGPRYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYDSI 134          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF2_CHICK (Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  302 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 565
            + Y  F   LP NDCRYA+YD  + T E+ +K  + FI W+P+ + +++KM+YA+SKD  +++  GI +E Q        L+ I+DR+
Sbjct:   66 DPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CN181865 vs. ExPASy Swiss-Prot
Match: COF1A_XENLA (Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 30/72 (41.67%), Postives = 47/72 (65.28%), Query Frame = -3
Query:  350 ESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQ 565
            + Y  F   LP NDCRYA+YD  + T E  +K  + F+ W+P+ + +++KM+YA+SKD  ++ L GI +E Q
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRLPGIKHEWQ 136          
The following BLAST results are available for this feature:
BLAST of CN181865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
COF1_HUMAN1.565e-1243.84Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3[more]
COF2_PIG3.855e-1138.64Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]
COF2_MOUSE3.855e-1138.64Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1[more]
COF2_HUMAN3.855e-1138.64Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1[more]
COF2_BOVIN3.855e-1138.64Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1[more]
COFI_GIBZE6.575e-1130.53Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]
COF2_CHICK6.575e-1138.64Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2[more]
COF1A_XENLA8.587e-1141.67Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181865 ID=CN181865; Name=CN181865; organism=Citrus sinensis; type=EST; length=708bp
CCCTTTTTTTTTCTATTAGAATACCCATTTCATTAAGCAAAGTCGAACAG
CATAAGTATCCATGTCTATGTCCAATTTTACCTGAGAAGCATCATGGCAA
TAGAGAGCCCGTGTCCTCTGGCATCGCAGTGCCTCAGCCATGAGCTCGTT
ATCAGCCTTCTCAGGTGCTGATTATTTAACAATAGCTATATGTACTATGT
GCCACACAAATACGGCAACTAATTGGAGGACAGTTTGTGCCTTCAGACCA
CAAATGCAGTCTCAAGGAAACAAATTCTTTTCCTTCAGGGCATTCTCAGC
GTGCACGGTCTCTGATCACCTCAAGATCCATCTCACTTGGGTCAGTTGCC
TGAATTTCATAGTGGATGCCGTCCAGCTCCCTCCTGAACCTGTCCTTTGA
TGTTGCATACAGCATCTTAGCTCGGATTCGGGACACGTCAGGAGACCATG
CAATGAAAAAGATCTTGCTTTTCTGACAATTCTCTGAGGTCACAAAATCA
AAGTCATAAACTGCATAACGACAGTCATTATCCGGCAAAGATGCAGTGAA
ATCGTCATAGCTCTCAGCTGGGCCTCCAGTCTTTTCAACCACTACCTCCT
TTTTCTTCTCATCAATCTTAAAAATCACATACCGATGTACTTTCTTCCTC
TGCAACTCTAGGTATGTGCTCTTGCTGTGATCAGCAACTCCCATTCCAGT
TTTTTTTT
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