CN188762

Overview
NameCN188762
Unique NameCN188762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188762 vs. ExPASy Swiss-Prot
Match: SEH1_YEAST (Nucleoporin SEH1 OS=Saccharomyces cerevisiae GN=SEH1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.872e-22
Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = 3
Query:  162 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 551
            Q  ++GH+D VHDV  DFYG+ +AT SSD  IK+  L    S  +   + + H   +  + WA P++G I+AS SYD  V +W+E    +      W +  T ND K S+ S+ +AP  LGL LAC  +DG + ++ A
Sbjct:    2 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 139          
BLAST of CN188762 vs. ExPASy Swiss-Prot
Match: SEH1_SCHPO (Nucleoporin seh1 OS=Schizosaccharomyces pombe GN=seh1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.095e-18
Identity = 48/141 (34.04%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  159 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRG--PVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN----DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG 563
            A  I+T H+D V+DV  DFYG+R+ + S+D  +K+   ++       T +   G   + +VAWAHP FG +LA CS D  V I++E  +N     W +     D +S+V  I++ P + G  LA  S+D  + ++ A   G
Sbjct:    6 ATTIQTNHQDLVNDVTYDFYGRRMVSCSADQRVKVYDFNDDTETWAITSEWRAGDASLMRVAWAHPSFGQVLAVCSLDRGVRIYEEQKKNFESKTWVEVAKLMDARSAVLDISFCPFQHGCKLAAVSADATLRIYEAMEPG 146          
BLAST of CN188762 vs. ExPASy Swiss-Prot
Match: CIAO1_AEDAE (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Aedes aegypti GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 51/153 (33.33%), Postives = 78/153 (50.98%), Query Frame = 3
Query:  168 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA-TADGGWDTTRIDQAHPVGVTSVSW 623
            +  GH  T+ DVA    G+ LA+AS D+++ I    +   +  ATL+GH   V  V+W+  K GS+LA+CS D  V +W+   ++++  A   N H   V  + W PHE    LA  S D  I ++    AD  W +     +H   V S+S+
Sbjct:   55 LSDGHSRTIRDVAWSPCGQYLASASFDATVAIWDKKSGEFECNATLEGHENEVKSVSWS--KSGSLLATCSRDKSVWVWEVAQEDEYECAAVLNTHTQDVKKVEWHPHE--DILASASYDNTIKLYKEDLADSDWSSFDTLVSHESTVWSISF 203          
BLAST of CN188762 vs. ExPASy Swiss-Prot
Match: CIAO1_CULQU (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Culex quinquefasciatus GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 50/158 (31.65%), Postives = 80/158 (50.63%), Query Frame = 3
Query:  153 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA-TADGGWDTTRIDQAHPVGVTSVSW 623
            +P   +  GH  T+ DVA    G+ LA+AS D+++ I    +   +  ATL+GH   V  V+W+  K G++LA+CS D  V IW+   ++++  A   N H   V  + W P+E    LA  S D  I ++    AD  W +     +H   V S+++
Sbjct:   50 VPKTVLSDGHTRTIRDVAWSPCGRFLASASFDATVAIWDRRSGEFECNATLEGHENEVKSVSWS--KSGALLATCSRDKSVWIWEVAQEDEYECAAVLNTHSQDVKKVEWHPNE--DVLASASYDNTIQLYREDLADSDWSSFDTLASHDSTVWSIAF 203          
BLAST of CN188762 vs. ExPASy Swiss-Prot
Match: CIAO1_DROWI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila willistoni GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 49/153 (32.03%), Postives = 75/153 (49.02%), Query Frame = 3
Query:  168 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPVGVTSVSW 623
            +  GH+ T+ ++     G+ LA+AS D++  I   S+   +  ATL+GH   V  V+W+  K G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I +F  +A D  WD T    +H   V S+ +
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--KSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVW--HPTKEILASASYDNTIKMFAESALDSDWDCTATLSSHTSTVWSIDF 202          
BLAST of CN188762 vs. ExPASy Swiss-Prot
Match: CIAO1_DROPS (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila pseudoobscura pseudoobscura GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 47/153 (30.72%), Postives = 74/153 (48.37%), Query Frame = 3
Query:  168 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSVSW 623
            +  GH+ T+ ++     G+ LA+AS D++  I   S+   +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I +F  +  D  WD T    +H   V S+ +
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVW--HPTKDILASASYDNTIKMFAESQLDSDWDCTATLSSHTSTVWSIDF 202          
BLAST of CN188762 vs. ExPASy Swiss-Prot
Match: CIAO1_DROPE (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila persimilis GN=Ciao1 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 47/153 (30.72%), Postives = 74/153 (48.37%), Query Frame = 3
Query:  168 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSVSW 623
            +  GH+ T+ ++     G+ LA+AS D++  I   S+   +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I +F  +  D  WD T    +H   V S+ +
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVW--HPTKDILASASYDNTIKMFAESQLDSDWDCTATLSSHTSTVWSIDF 202          
BLAST of CN188762 vs. ExPASy Swiss-Prot
Match: CIAO1_DROAN (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila ananassae GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 49/154 (31.82%), Postives = 74/154 (48.05%), Query Frame = 3
Query:  168 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP-HELGLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPVGVTSVSW 623
            +  GH+ T+ ++     G+ LA+AS D +  I   S+   +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W P  EL   LA  S D  I +F   A D  WD      +H   V S+ +
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDGTTAIWSKSSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKEL---LASASYDNTIKMFAEDALDSDWDCVATLSSHTSTVWSIDF 202          

HSP 2 Score: 70.8626 bits (172), Expect = 7.385e-12
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 3
Query:  300 TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFND-HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWA 626
            TL+GH+G +W VAW HPK G++ ASC  D  + IW   N N WT     +D HK ++  I W+P   G  LA  S DG  ++++ ++ G ++     + H   V SVSW+
Sbjct:    9 TLQGHKGRIWGVAW-HPK-GNVFASCGEDKAIRIWSL-NGNTWTTKTILSDGHKRTIREIRWSP--CGQYLASASFDGTTAIWSKSS-GEFECNATLEGHENEVKSVSWS 112          
BLAST of CN188762 vs. ExPASy Swiss-Prot
Match: CIO1B_SALSA (Probable cytosolic iron-sulfur protein assembly protein ciao1-B OS=Salmo salar GN=ciao1b PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 51/156 (32.69%), Postives = 75/156 (48.08%), Query Frame = 3
Query:  168 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP-HELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPA 632
            ++ GH+ TV  VA    G  LA+AS D++  I    N   + L  L+GH   V  VAWA    G++LA+CS D  V IW+   +N++      N H   V  + W P  EL   LA  S D N+ V+    D  W+     + H   V  +++ P+
Sbjct:   56 LQDGHQRTVRKVAWSPCGNYLASASFDATTCIWKKKNDDFECLTVLEGHENEVKCVAWA--PSGNLLATCSRDKSVWIWEVDEENEYECVSVVNSHTQDVKHVVWHPTQEL---LASCSYDNNVCVY-KEEDDDWECRATLEGHTSTVWGLTFDPS 205          
BLAST of CN188762 vs. ExPASy Swiss-Prot
Match: CIAO1_DROVI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila virilis GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 49/153 (32.03%), Postives = 74/153 (48.37%), Query Frame = 3
Query:  168 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPVGVTSVSW 623
            +  GH+ T+ +V     G+ LA+AS D++  I     S  +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I +F  +A D  WD T    +H   V S+ +
Sbjct:   54 LSDGHKRTIREVRWSPCGEYLASASFDATTAIW----SKHECTATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHSQDVKRVVW--HPTKEVLASASYDNTIKMFAESALDSDWDCTATLSSHTSTVWSIDF 198          
The following BLAST results are available for this feature:
BLAST of CN188762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
SEH1_YEAST7.872e-2238.41Nucleoporin SEH1 OS=Saccharomyces cerevisiae GN=SE... [more]
SEH1_SCHPO3.095e-1834.04Nucleoporin seh1 OS=Schizosaccharomyces pombe GN=s... [more]
CIAO1_AEDAE1.438e-1533.33Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_CULQU1.217e-1431.65Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROWI2.712e-1432.03Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROPS3.916e-1330.72Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROPE3.916e-1330.72Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROAN3.916e-1331.82Probable cytosolic iron-sulfur protein assembly pr... [more]
CIO1B_SALSA5.114e-1332.69Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROVI8.723e-1332.03Probable cytosolic iron-sulfur protein assembly pr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006L14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188762 ID=CN188762; Name=CN188762; organism=Citrus sinensis; type=EST; length=691bp
GTTTATTACTCTCATCCGGTGCTACTGGTCGGTCTTCGAATCCGCTCCTC
TCTTAAGAAATTTGGAGCTGAGAACATAAGATAAAAAGGAGCTACGAACT
AGTGATCAAGGAGTTGAAGTTTGAGGGGTAAAATAAAGAAATATAAAGTA
AGATGCCTGCACAAAAAATTGAAACTGGTCATGAAGACACTGTCCATGAT
GTAGCCATGGATTTCTATGGAAAACGTTTAGCCACAGCTTCGTCTGACTC
CAGCATTAAGATAATTGGTTTAAGCAACTCTGCTTCCCAGCACCTTGCTA
CATTGAAAGGCCATAGAGGTCCTGTTTGGCAAGTTGCATGGGCACACCCC
AAGTTTGGGTCAATCCTTGCTTCCTGTTCCTATGATGGCCAAGTTATTAT
CTGGAAGGAAGGTAATCAAAATGATTGGACACAGGCTCATACTTTTAATG
ATCATAAATCATCTGTCAACTCCATTGCGTGGGCACCTCATGAACTTGGT
CTCTCCTTGGCTTGTGGATCTTCTGATGGGAACATCTCAGTCTTTACTGC
TACAGCTGATGGTGGCTGGGATACTACCAGGATAGACCAGGCCCATCCAG
TCGGAGTAACATCTGTTTCATGGGCCCCGGCAATGGCTCCTGGTGCTTTA
GTTGGATTGGGCTTACTGGATCCTGTTCAGAAATTGGCTTC
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