CN181861

Overview
NameCN181861
Unique NameCN181861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:215..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.424e-55
Identity = 96/126 (76.19%), Postives = 109/126 (86.51%), Query Frame = -1 
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RV CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:   54 RVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179
[Close]
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.424e-55
Identity = 96/126 (76.19%), Postives = 109/126 (86.51%), Query Frame = -1 
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RV CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:   54 RVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179
[Close]
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.401e-55
Identity = 95/126 (75.40%), Postives = 113/126 (89.68%), Query Frame = -1 
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            R++CM+VWP  G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG
Sbjct:   43 RIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167
[Close]
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.401e-55
Identity = 98/125 (78.40%), Postives = 108/125 (86.40%), Query Frame = -1 
Query:  315 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 689
            RVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YLI  GWIPCLEFELE  +VYRE+++SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RIIGFDNKRQVQCISFIA KPP
Sbjct:   56 RVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180
[Close]
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.401e-55
Identity = 95/124 (76.61%), Postives = 107/124 (86.29%), Query Frame = -1 
Query:  318 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 689
            RV+CM VWPP   KK+ETLSYLP LSDE LLKEI YL++ GW+PCLEFE E G+VYREHH+SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP
Sbjct:   54 RVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
[Close]
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.401e-55
Identity = 94/126 (74.60%), Postives = 111/126 (88.10%), Query Frame = -1 
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   54 RVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179
[Close]
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.401e-55
Identity = 94/126 (74.60%), Postives = 111/126 (88.10%), Query Frame = -1 
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   54 RVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179
[Close]
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.401e-55
Identity = 94/126 (74.60%), Postives = 111/126 (88.10%), Query Frame = -1 
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   54 RVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179
[Close]
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.401e-55
Identity = 95/126 (75.40%), Postives = 109/126 (86.51%), Query Frame = -1 
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+  GW+PCLEFE E G+VYRE+H SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIGFDN RQVQCISFIA KPPG
Sbjct:   54 RVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179
[Close]
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.401e-55
Identity = 95/126 (75.40%), Postives = 109/126 (86.51%), Query Frame = -1 
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+  GW+PCLEFE E G+VYRE+H SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIGFDN RQVQCISFIA KPPG
Sbjct:   54 RVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179
The following BLAST results are available for this feature:
BLAST of CN181861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS3B_SOLLC2.424e-5576.19Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC2.424e-5576.19Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS_HORVU5.401e-5575.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR5.401e-5578.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN5.401e-5576.61Ribulose bisphosphate carboxylase small chain, chl... [more]
RBSC_SOLTU5.401e-5574.60Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSB_SOLTU5.401e-5574.60Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBSA_SOLTU5.401e-5574.60Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS2_PETHY5.401e-5575.40Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS1_PETHY5.401e-5575.40Ribulose bisphosphate carboxylase small chain SSU8... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181861 ID=CN181861; Name=CN181861; organism=Citrus sinensis; type=EST; length=689bp
GCCCCTTTTGGAGAATCATAAAACTACTCTTTTATTCCAGTAATTCTCAC
TCATTAAACTGAACATCCGAGACCCAGATTAATGAAACTGAAAACAAAGG
ATTCAATTATTAAAATATATATAAAAAAAAAAAAAAGAAGCCAAAGTCGG
GGAGAAAACCAAAAAAGTTTGAGCAGCAGCAACAGCAGCCTAAGTACAAA
TTAAACGCAAACCGAACCCCCATTGATCGAATGATCATTATGGGGGTTAC
ACATAATAATAATCAACAATATTGCATGGGTGGTTACACAAATTTAATTG
GGAACCTAGACGCCTGGTGGCTTGGCAGCAATGAAACTGATGCACTGCAC
TTGACGCTTGTTGTCAAATCCGATAATTCGGACGAATGAATGTGGGTATT
CCTTCTGGACCTCCCCAACCTCCTTCAAAACCTGGGTTGCATCTGTGCAC
CCATACATGGGCAGCTTCCACATTGTCCAGTAGCGTCCATCGTAGTATCC
TGGTGACTTGTGGTGCTCACGGTACACCCATCCTTTCTCCAACTCGAATT
CCAAGCAGGGAATCCAGCCGGAGCGGATAAGGTAATTGATTTCCTTGAGC
AAAGCTTCATCGGACAGTGGCGGGAGGTATGAGAGAGTCTCGAACTTCTT
CAAGCCAGGTGGTGGCCACACCTTCATGCATTGGACTCT
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