CN181861

Overview
NameCN181861
Unique NameCN181861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.257e-19
Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  318 PGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 659
            P  +++ETLSYLPPL+D  + K++ Y++  G+IP +EF                     YWT+WKLP++G   + +VL EV   + +YP  ++R++GFDN +Q Q +SFI  KP
Sbjct:    5 PKERRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFN------------EVSEPTELYWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKP 106          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.389e-18
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  330 PGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 659
            P   KFETLSYLP L+ + + +++ Y++  GW P +E            H  P    G YW MWKLPM+G TD   +LKE     K  PH+ VRI+G+DN +Q Q  S +
Sbjct:   14 PASAKFETLSYLPALTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQGTSLV 111          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.370e-18
Identity = 38/111 (34.23%), Postives = 68/111 (61.26%), Query Frame = -1
Query:  318 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 650
            +KFET SYLPPL+D+ + +++ Y + +G+ P +EF               G  +   WT+WKLP++G     +VL E+   ++++P++++R++ FD+ RQVQ + F+  KP
Sbjct:    7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFSFT------------GKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.838e-17
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = -1
Query:  318 PGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 659
            P  K+FET SYLP +S E + K+I Y++  GW P +E            H  P      YW MWKLPM+G TD  +++ E+   ++  P+  +++IG+DN RQ Q  + +  +P
Sbjct:   21 PKSKRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQGTAMLVYRP 122          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.699e-16
Identity = 43/115 (37.39%), Postives = 58/115 (50.43%), Query Frame = -1
Query:  315 PGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 659
            P  +KFET SYLP L  E + K++ Y++  GW P +E            H  P      YW MWKLPM+G TD   +L E     K +P   VR+IG+DN  Q Q  + +  + P
Sbjct:   14 PSSRKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQGTAMVIFRGP 116          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = -1
Query:  351 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQ 650
            +KFET SYLP +  + + K++ Y++  GW P +E            H  P      YW MWKLPM+G TD   +LKE     K +P++ VR+IGFDN  Q
Sbjct:   17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQ 104          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.430e-16
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = -1
Query:  345 PGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 659
            P  +KFET SYLP ++   + K++ YL+  GW P +E            H  P +    YW MWKLPM+G TD  ++L E     K  P++ VR++G+DN  Q Q
Sbjct:   14 PASRKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQ 106          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = -1
Query:  345 PGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 659
            P  +K ET SYLP ++ + +  ++ Y+I  GW P +E            H  P      YW MWKLPM+G TDA  VL EV    K  P++ VR+IG+DN  Q Q
Sbjct:   14 PTSRKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQ 106          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = -1
Query:  315 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 506
            S  Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 73          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  318 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 647
            ++ET SYLPPL+ E +L++I Y++ +GW   LE            H+ P      YW MWK+P +G  D   +L E+   ++ YP   VR++G+D   Q +  SF+A +P
Sbjct:   15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP 112          
The following BLAST results are available for this feature:
BLAST of CN181861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS_ANASP1.257e-1938.60Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS2_THIFE1.389e-1840.91Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_CYAPA2.370e-1834.23Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS_PSEHY5.838e-1735.96Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_ALVHS1.699e-1637.39Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS1_CHRVI4.942e-1640.00Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_THIDA8.430e-1638.10Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS1_HYDMR4.184e-1540.00Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS2_ACECL5.464e-1551.56Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS2_CHRVI7.136e-1535.45Ribulose bisphosphate carboxylase small chain 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181861 ID=CN181861; Name=CN181861; organism=Citrus sinensis; type=EST; length=689bp
GCCCCTTTTGGAGAATCATAAAACTACTCTTTTATTCCAGTAATTCTCAC
TCATTAAACTGAACATCCGAGACCCAGATTAATGAAACTGAAAACAAAGG
ATTCAATTATTAAAATATATATAAAAAAAAAAAAAAGAAGCCAAAGTCGG
GGAGAAAACCAAAAAAGTTTGAGCAGCAGCAACAGCAGCCTAAGTACAAA
TTAAACGCAAACCGAACCCCCATTGATCGAATGATCATTATGGGGGTTAC
ACATAATAATAATCAACAATATTGCATGGGTGGTTACACAAATTTAATTG
GGAACCTAGACGCCTGGTGGCTTGGCAGCAATGAAACTGATGCACTGCAC
TTGACGCTTGTTGTCAAATCCGATAATTCGGACGAATGAATGTGGGTATT
CCTTCTGGACCTCCCCAACCTCCTTCAAAACCTGGGTTGCATCTGTGCAC
CCATACATGGGCAGCTTCCACATTGTCCAGTAGCGTCCATCGTAGTATCC
TGGTGACTTGTGGTGCTCACGGTACACCCATCCTTTCTCCAACTCGAATT
CCAAGCAGGGAATCCAGCCGGAGCGGATAAGGTAATTGATTTCCTTGAGC
AAAGCTTCATCGGACAGTGGCGGGAGGTATGAGAGAGTCTCGAACTTCTT
CAAGCCAGGTGGTGGCCACACCTTCATGCATTGGACTCT
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