CN181861
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.320e-15 Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = -1 Query: 333 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 641 ET S+LP + + + +I Y+I GW P LE H++P YW MWKLPM+G D VL E+ + + YP+ +R+IG+DN Q Q +F Sbjct: 15 ETFSFLPEFTADEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13 Identity = 38/117 (32.48%), Postives = 60/117 (51.28%), Query Frame = -1 Query: 309 PGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 659 P +K T SYLPP+ + + +++ +++++GW P +E H P + YW MWKLPM+G TD +L E+ + P VR+IG+DN Q Q + I + V Sbjct: 14 PESRKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIE------------HTEPDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQGANMIVYRGTAV 118
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13 Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = -1 Query: 330 LKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 653 LKK+ET SYLP ++ E + ++I + I GW P +E EKG + YW MWKLP++G V+ E+ +E+P VR + +DN Q Q ++F+ Sbjct: 9 LKKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVE-HTEKGTPAK----------ASYWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFV 105
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13 Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = -1 Query: 330 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 647 K+ET SYLP + E + ++I YLI GW P +E H P YW MWKLPM+G V+ E+ + +P VR++G+DN Q Q +F+ Sbjct: 12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE------------HVEPERASTYYWYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGSAFV 105
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_HALNC (Ribulose bisphosphate carboxylase small chain OS=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) GN=cbbS PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11 Identity = 35/106 (33.02%), Postives = 54/106 (50.94%), Query Frame = -1 Query: 330 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 647 K+ET SYLPP++ E + +I Y I GW P +E K + +YW MWKLP +G + VL E+ + YP V+++ +DN Q ++F+ Sbjct: 12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM------------NQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFV 105
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_SYNPX (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH8102) GN=cbbS PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11 Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = -1 Query: 330 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 641 ET +LPP++ + + +I Y+I GW P +E H P YW+ WKLP +G D V+ E+ + YP VRI+G+D Q Q F+ Sbjct: 17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_SYNPW (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH7803) GN=cbbS PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11 Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = -1 Query: 330 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 641 ET +LPP++ + + +I Y+I GW P +E H P YW+ WKLP +G D V+ E+ + YP VRI+G+D Q Q F+ Sbjct: 17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_GUITH (Ribulose bisphosphate carboxylase small chain OS=Guillardia theta GN=rbcS PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11 Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = -1 Query: 318 SYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ--CISFIAAKP 632 S+LP L+DE ++K+I Y I W +E W H ++ YW +W LP++G D V+ E+ +K P +V++ FDN R V+ C+SFI +P Sbjct: 9 SFLPDLTDEQIVKQIQYAISKNWALNVE------WTDDPHPRNA------YWDLWGLPLFGIKDPAAVMFEINACRKAKPACYVKVNAFDNSRGVESCCLSFIVQRP 103 The following BLAST results are available for this feature:
BLAST of CN181861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181861 ID=CN181861; Name=CN181861; organism=Citrus sinensis; type=EST; length=689bpback to top |