CN181861

Overview
NameCN181861
Unique NameCN181861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:215..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.320e-15
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = -1
Query:  333 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 641
            ET S+LP  + + +  +I Y+I  GW P LE            H++P      YW MWKLPM+G  D   VL E+ + +  YP+  +R+IG+DN  Q Q  +F
Sbjct:   15 ETFSFLPEFTADEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 38/117 (32.48%), Postives = 60/117 (51.28%), Query Frame = -1
Query:  309 PGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 659
            P  +K  T SYLPP+ +  + +++ +++++GW P +E            H  P +    YW MWKLPM+G TD   +L E+    +  P   VR+IG+DN  Q Q  + I  +   V
Sbjct:   14 PESRKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIE------------HTEPDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQGANMIVYRGTAV 118          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = -1
Query:  330 LKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 653
            LKK+ET SYLP ++ E + ++I + I  GW P +E   EKG   +            YW MWKLP++G      V+ E+    +E+P   VR + +DN  Q Q ++F+
Sbjct:    9 LKKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVE-HTEKGTPAK----------ASYWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFV 105          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = -1
Query:  330 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 647
            K+ET SYLP +  E + ++I YLI  GW P +E            H  P      YW MWKLPM+G      V+ E+    + +P   VR++G+DN  Q Q  +F+
Sbjct:   12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE------------HVEPERASTYYWYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGSAFV 105          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_HALNC (Ribulose bisphosphate carboxylase small chain OS=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) GN=cbbS PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 35/106 (33.02%), Postives = 54/106 (50.94%), Query Frame = -1
Query:  330 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 647
            K+ET SYLPP++ E +  +I Y I  GW P +E    K  +             +YW MWKLP +G  +   VL E+   +  YP   V+++ +DN  Q   ++F+
Sbjct:   12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM------------NQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFV 105          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_SYNPX (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH8102) GN=cbbS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = -1
Query:  330 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 641
            ET  +LPP++ + +  +I Y+I  GW P +E            H  P      YW+ WKLP +G  D   V+ E+    + YP   VRI+G+D   Q Q   F+
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_SYNPW (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH7803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = -1
Query:  330 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 641
            ET  +LPP++ + +  +I Y+I  GW P +E            H  P      YW+ WKLP +G  D   V+ E+    + YP   VRI+G+D   Q Q   F+
Sbjct:   17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_GUITH (Ribulose bisphosphate carboxylase small chain OS=Guillardia theta GN=rbcS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = -1
Query:  318 SYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ--CISFIAAKP 632
            S+LP L+DE ++K+I Y I   W   +E      W    H ++       YW +W LP++G  D   V+ E+   +K  P  +V++  FDN R V+  C+SFI  +P
Sbjct:    9 SFLPDLTDEQIVKQIQYAISKNWALNVE------WTDDPHPRNA------YWDLWGLPLFGIKDPAAVMFEINACRKAKPACYVKVNAFDNSRGVESCCLSFIVQRP 103          
The following BLAST results are available for this feature:
BLAST of CN181861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS2_HYDMR9.320e-1536.89Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_RHOCA1.030e-1332.48Ribulose bisphosphate carboxylase small chain OS=R... [more]
RBS_NITVU3.916e-1335.19Ribulose bisphosphate carboxylase small chain OS=N... [more]
RBS1_THIFE3.916e-1335.85Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_HALNC1.645e-1133.02Ribulose bisphosphate carboxylase small chain OS=H... [more]
RBS_SYNPX2.149e-1132.69Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNPW2.149e-1132.69Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_GUITH2.149e-1133.64Ribulose bisphosphate carboxylase small chain OS=G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001J11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181861 ID=CN181861; Name=CN181861; organism=Citrus sinensis; type=EST; length=689bp
GCCCCTTTTGGAGAATCATAAAACTACTCTTTTATTCCAGTAATTCTCAC
TCATTAAACTGAACATCCGAGACCCAGATTAATGAAACTGAAAACAAAGG
ATTCAATTATTAAAATATATATAAAAAAAAAAAAAAGAAGCCAAAGTCGG
GGAGAAAACCAAAAAAGTTTGAGCAGCAGCAACAGCAGCCTAAGTACAAA
TTAAACGCAAACCGAACCCCCATTGATCGAATGATCATTATGGGGGTTAC
ACATAATAATAATCAACAATATTGCATGGGTGGTTACACAAATTTAATTG
GGAACCTAGACGCCTGGTGGCTTGGCAGCAATGAAACTGATGCACTGCAC
TTGACGCTTGTTGTCAAATCCGATAATTCGGACGAATGAATGTGGGTATT
CCTTCTGGACCTCCCCAACCTCCTTCAAAACCTGGGTTGCATCTGTGCAC
CCATACATGGGCAGCTTCCACATTGTCCAGTAGCGTCCATCGTAGTATCC
TGGTGACTTGTGGTGCTCACGGTACACCCATCCTTTCTCCAACTCGAATT
CCAAGCAGGGAATCCAGCCGGAGCGGATAAGGTAATTGATTTCCTTGAGC
AAAGCTTCATCGGACAGTGGCGGGAGGTATGAGAGAGTCTCGAACTTCTT
CAAGCCAGGTGGTGGCCACACCTTCATGCATTGGACTCT
back to top