CN181861

Overview
NameCN181861
Unique NameCN181861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 5.401e-55
Identity = 95/125 (76.00%), Postives = 109/125 (87.20%), Query Frame = -1
Query:  315 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 689
            RV CM+VWPP G KKFETLSYLP L+D  L KE++YLIR+ WIPC+EFELE G+VYREH  SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:   52 RVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.054e-55
Identity = 97/126 (76.98%), Postives = 110/126 (87.30%), Query Frame = -1
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RVQCMKVWP  G+KKFETLSYLP + DEAL+K+I YL+RS WIPCLEF   KG+V+RE+H+SPGYYDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RIIGFDN RQVQCISFIA KP G
Sbjct:   55 RVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.054e-55
Identity = 96/124 (77.42%), Postives = 109/124 (87.90%), Query Frame = -1
Query:  318 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 689
            RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFELEKG+VYREH+KSPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGFDN RQVQCISFIA  P
Sbjct:   54 RVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.054e-55
Identity = 96/124 (77.42%), Postives = 109/124 (87.90%), Query Frame = -1
Query:  318 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 689
            RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFELEKG+VYREH+KSPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGFDN RQVQCISFIA  P
Sbjct:   54 RVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.213e-55
Identity = 94/126 (74.60%), Postives = 113/126 (89.68%), Query Frame = -1
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            R++CM+VWP  G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG
Sbjct:   44 RIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.203e-54
Identity = 95/125 (76.00%), Postives = 107/125 (85.60%), Query Frame = -1
Query:  315 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 689
            RVQCM+VWPP G KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREH++S GYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPP
Sbjct:   52 RVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.203e-54
Identity = 95/125 (76.00%), Postives = 108/125 (86.40%), Query Frame = -1
Query:  315 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 689
            RV CMKVWPP G KKFETLSYLP LSD  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISFIA KPP
Sbjct:   52 RVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.203e-54
Identity = 95/125 (76.00%), Postives = 108/125 (86.40%), Query Frame = -1
Query:  315 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 689
            RV CMKVWPP G KKFETLSYLP LSD  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISFIA KPP
Sbjct:   52 RVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.203e-54
Identity = 94/126 (74.60%), Postives = 106/126 (84.13%), Query Frame = -1
Query:  312 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 689
            RVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KP G
Sbjct:   56 RVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181          
BLAST of CN181861 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.571e-54
Identity = 93/124 (75.00%), Postives = 109/124 (87.90%), Query Frame = -1
Query:  318 RVQCMKVWPPPGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 689
            RV CM+VWPP G KKFETLSYLPPL++E L KE+ YLIR GWIPCLEFELEKG+VYRE+H+SPGYYDGRYWTMW+LP++G TD++QVLKE+ + + EYP SF+RIIGFDN RQVQCISFIA  P
Sbjct:   54 RVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
The following BLAST results are available for this feature:
BLAST of CN181861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS1A_ARATH5.401e-5576.00Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS_MUSAC7.054e-5576.98Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_PEA7.054e-5577.42Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS2_PEA7.054e-5577.42Ribulose bisphosphate carboxylase small chain 3C, ... [more]
RBS2_WHEAT9.213e-5574.60Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS4_SOYBN1.203e-5476.00Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3B_ARATH1.203e-5476.00Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS2B_ARATH1.203e-5476.00Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS1_AMAHP1.203e-5474.60Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_MEDSA1.571e-5475.00Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181861 ID=CN181861; Name=CN181861; organism=Citrus sinensis; type=EST; length=689bp
GCCCCTTTTGGAGAATCATAAAACTACTCTTTTATTCCAGTAATTCTCAC
TCATTAAACTGAACATCCGAGACCCAGATTAATGAAACTGAAAACAAAGG
ATTCAATTATTAAAATATATATAAAAAAAAAAAAAAGAAGCCAAAGTCGG
GGAGAAAACCAAAAAAGTTTGAGCAGCAGCAACAGCAGCCTAAGTACAAA
TTAAACGCAAACCGAACCCCCATTGATCGAATGATCATTATGGGGGTTAC
ACATAATAATAATCAACAATATTGCATGGGTGGTTACACAAATTTAATTG
GGAACCTAGACGCCTGGTGGCTTGGCAGCAATGAAACTGATGCACTGCAC
TTGACGCTTGTTGTCAAATCCGATAATTCGGACGAATGAATGTGGGTATT
CCTTCTGGACCTCCCCAACCTCCTTCAAAACCTGGGTTGCATCTGTGCAC
CCATACATGGGCAGCTTCCACATTGTCCAGTAGCGTCCATCGTAGTATCC
TGGTGACTTGTGGTGCTCACGGTACACCCATCCTTTCTCCAACTCGAATT
CCAAGCAGGGAATCCAGCCGGAGCGGATAAGGTAATTGATTTCCTTGAGC
AAAGCTTCATCGGACAGTGGCGGGAGGTATGAGAGAGTCTCGAACTTCTT
CAAGCCAGGTGGTGGCCACACCTTCATGCATTGGACTCT
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