CN181856

Overview
NameCN181856
Unique NameCN181856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181856_ssr5 microsatellite CN181856_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 57/131 (43.51%), Postives = 71/131 (54.20%), Query Frame = 2
Query:  380 SESCRAETRSFLRGIDVNRLPSHA-------DNEEEXXXXXXXXXXXXXXGKRSEREPNGDELE---------------MERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            SE+ R+E  +  RG DVNR PS A       D+EE               G     + +G  L                 ER+ SR  SDD++G ++RKKLRLSK+QSA LEESFKEH+TLNPKQK+ALAK
Sbjct:   79 SETGRSEAAA--RGFDVNRAPSVAAGAPGMEDDEEGPGAAPALSSSPNDSGGSFPLDLSGHGLRGHAEAAAQGGGGGGGGERSSSRA-SDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAK 206          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 2
Query:  521 EREPNGDEL--EMERACSRGISDDEDGD--TSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            ER  N  ++  E+ER+ SR  ++D D +  ++RKKLRLSKDQSA LE+SFKEH+TLNPKQK+ALAK
Sbjct:  157 ERRSNKRDIDDEVERSASRASNEDNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAK 222          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 2
Query:  542 ELEMERAC---SRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            E E ERA    S   +DD++G  SRKKLRLSK+QSA+LE+ FKEH+TLNPKQK+ALAK
Sbjct:   69 EYEYERALYSSSAAAADDDEGCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAK 126          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 2
Query:  542 ELEMERAC---SRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            E E ERA    S   +DD++G  SRKKLRLSK+QSA+LE+ FKEH+TLNPKQK+ALAK
Sbjct:   69 EYEYERALYSSSAAAADDDEGCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAK 126          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  515 RSEREPNGDELEMERACSRGISD---DEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            + ER+   +  E E    R ISD   DE+G ++RKKLRL+K QSA+LEESFK+H+TLNPKQK  LA+
Sbjct:   79 KRERDGGEESPEEEEMTERVISDYHEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLAR 145          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 2
Query:  542 ELEMERACSRGISDDE--DGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALA 703
            E E+ER+ S G+ DD+  DG   RKKLRLSKDQ+A+LEE FK H+TLNPKQK+ALA
Sbjct:   92 ERELERSGS-GVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALA 146          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 2
Query:  542 ELEMERACSRGISDDE--DGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALA 703
            E E+ER+ S G+ DD+  DG   RKKLRLSKDQ+A+LEE FK H+TLNPKQK+ALA
Sbjct:   92 ERELERSGS-GVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALA 146          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  524 REPNGDELEMERACSR--GISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            +    +E + ER  S   G  DD+DG T RKKLRL+K+QSA+LE+ F+EH+TLNPKQK+ALAK
Sbjct:   98 KRERAEEADGERVSSTAAGRDDDDDGST-RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAK 159          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  524 REPNGDELEMERACSR--GISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            +    +E + ER  S   G  DD+DG T RKKLRL+K+QSA+LE+ F+EH+TLNPKQK+ALAK
Sbjct:   98 KRERAEEADGERVSSTAAGRDDDDDGST-RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAK 159          
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  548 EMERACSRGI--SDDEDG----DTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            E ERA  RG   SD+EDG    D SRKKLRLSKDQSA+LE+SF+EH TLNP+QK  LA+
Sbjct:   56 EEERAGLRGGGGSDEEDGGCGIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQ 114          
The following BLAST results are available for this feature:
BLAST of CN181856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
HOX27_ORYSI6.354e-1443.51Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HAT14_ARATH4.118e-1360.61Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
HOX15_ORYSJ2.044e-1265.52Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX15_ORYSI2.044e-1265.52Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HAT9_ARATH2.260e-1155.22Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HOX2_ORYSJ3.855e-1166.07Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI3.855e-1166.07Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX19_ORYSJ5.034e-1157.14Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI5.034e-1157.14Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX17_ORYSJ8.587e-1166.10Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181856 ID=CN181856; Name=CN181856; organism=Citrus sinensis; type=EST; length=706bp
GAGGCTCTCTCTCTCCGGAGGCACAGAATTTCTCTTGTTACTCGAATAAA
GAGCCGTTTGAGCAAGAACAAGAAAACACTTCAAATACTATACAAATACG
TCAAATAATTTAAAGCTAGAGCTGTTTGAGCAAGAACAAGAAAACAGCCA
TGGCTGAGAAAGATGATCTGGGTTTGAGTCTTAGCTTGAGCTTTCCTCAA
AATCACCATTCTTTACAGCTAAATCTCATGCCTTCTTCTGCTTGTTCCAC
TTCTCCTTCTGGTTTCAGTCTCCAAAAAACCCCTTGGAACGAGGCCTTAT
TCCCACCTTCAGATCCAAGTTTCAGAAAATAATTTCACGACACTATATCT
AATTCTTGATCGGACATGCAGATCCAAACTCTGAGTCTTGTCGCGCCGAG
ACCCGATCATTTCTTAGAGGAATCGACGTGAATCGATTGCCGTCACATGC
AGATAACGAAGAAGAAGTGGGCGTCTCATCTCCTAACAGCACGATTTCGA
GCGTTAGCGGCAAGAGAAGCGAGCGGGAACCTAATGGAGATGAGCTCGAA
ATGGAGAGAGCTTGCTCTCGTGGTATCAGCGACGATGAAGATGGTGACAC
TTCAAGAAAGAAGCTGAGACTTTCTAAAGATCAGTCAGCCATTCTTGAAG
AGAGCTTCAAAGAGCACAACACTCTCAACCCAAAGCAAAAGTTGGCGTTG
GCAAAG
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