CN181856

Overview
NameCN181856
Unique NameCN181856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181856_ssr5 microsatellite CN181856_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181856 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 2 
Query:  548 EMERACSRGI--SDDEDG----DTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAK 706
            E ERA  RG   SD+EDG    D SRKKLRLSKDQSA+LE+SF+EH TLNP+QK  LA+
Sbjct:   56 EEERAGLRGGGGSDEEDGGCGIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQ 114
The following BLAST results are available for this feature:
BLAST of CN181856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
HOX17_ORYSI8.587e-1166.10Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181856 ID=CN181856; Name=CN181856; organism=Citrus sinensis; type=EST; length=706bp
GAGGCTCTCTCTCTCCGGAGGCACAGAATTTCTCTTGTTACTCGAATAAA
GAGCCGTTTGAGCAAGAACAAGAAAACACTTCAAATACTATACAAATACG
TCAAATAATTTAAAGCTAGAGCTGTTTGAGCAAGAACAAGAAAACAGCCA
TGGCTGAGAAAGATGATCTGGGTTTGAGTCTTAGCTTGAGCTTTCCTCAA
AATCACCATTCTTTACAGCTAAATCTCATGCCTTCTTCTGCTTGTTCCAC
TTCTCCTTCTGGTTTCAGTCTCCAAAAAACCCCTTGGAACGAGGCCTTAT
TCCCACCTTCAGATCCAAGTTTCAGAAAATAATTTCACGACACTATATCT
AATTCTTGATCGGACATGCAGATCCAAACTCTGAGTCTTGTCGCGCCGAG
ACCCGATCATTTCTTAGAGGAATCGACGTGAATCGATTGCCGTCACATGC
AGATAACGAAGAAGAAGTGGGCGTCTCATCTCCTAACAGCACGATTTCGA
GCGTTAGCGGCAAGAGAAGCGAGCGGGAACCTAATGGAGATGAGCTCGAA
ATGGAGAGAGCTTGCTCTCGTGGTATCAGCGACGATGAAGATGGTGACAC
TTCAAGAAAGAAGCTGAGACTTTCTAAAGATCAGTCAGCCATTCTTGAAG
AGAGCTTCAAAGAGCACAACACTCTCAACCCAAAGCAAAAGTTGGCGTTG
GCAAAG
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