CN181855

Overview
NameCN181855
Unique NameCN181855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.150e-22
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCE+LKRCCE LTEENRRLQKE+ ELRALK    FYM + P TTL+MCPSCER
Sbjct:  139 RARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHL-PATTLSMCPSCER 201          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCE+LKRCCE LTEENRRL KE+ ELRALK +  FYM + P TTL+MCPSCER
Sbjct:  223 RARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHL-PATTLSMCPSCER 285          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCE+LKRCCE LTEENRRL KE+ ELRALK +  FYM + P TTL+MCPSCER
Sbjct:  223 RARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHL-PATTLSMCPSCER 285          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 53/80 (66.25%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSP----------------QFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCEFLKRCCE LTEENRRLQ+E+QELRALK +P                 FYMQ+ P  TLT+CPSCER
Sbjct:  176 RARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQL-PAATLTICPSCER 254          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 53/80 (66.25%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSP----------------QFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCEFLKRCCE LTEENRRLQ+E+QELRALK +P                 FYMQ+ P  TLT+CPSCER
Sbjct:  176 RARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQL-PAATLTICPSCER 254          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCEFLK+CCE L +EN RLQKE+QEL+ LKL+  FYM M P +TLT CPSCER
Sbjct:  162 RARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHM-PASTLTKCPSCER 224          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.657e-20
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQ-------FYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCE LKRCCE LT+ENRRL +E+QELRALKL+         +  ++ PPTTLTMCPSCER
Sbjct:  206 RARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCER 276          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.657e-20
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQ-------FYMQMTPPTTLTMCPSCER 732
            RARTKLKQTEVDCE LKRCCE LT+ENRRL +E+QELRALKL+         +  ++ PPTTLTMCPSCER
Sbjct:  206 RARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCER 276          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18
Identity = 47/69 (68.12%), Postives = 53/69 (76.81%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQ--FYMQMT---PPTTLTMCPSCER 732
            RARTKLKQTEVDCE LKRCCE LTEENRRL +E+Q+LRAL  S    F+M  T   P  TL++CPSCER
Sbjct:  143 RARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCER 211          
BLAST of CN181855 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18
Identity = 47/69 (68.12%), Postives = 53/69 (76.81%), Query Frame = -3
Query:  541 RARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQ--FYMQMT---PPTTLTMCPSCER 732
            RARTKLKQTEVDCE LKRCCE LTEENRRL +E+Q+LRAL  S    F+M  T   P  TL++CPSCER
Sbjct:  143 RARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCER 211          
The following BLAST results are available for this feature:
BLAST of CN181855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HOX11_ORYSI5.150e-2279.69Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX27_ORYSJ8.785e-2278.13Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI8.785e-2278.13Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX19_ORYSJ4.360e-2166.25Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI4.360e-2166.25Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HAT9_ARATH5.694e-2175.00Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HOX1_ORYSJ1.657e-2069.01Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX1_ORYSI1.657e-2069.01Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX15_ORYSJ7.696e-1868.12Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX15_ORYSI7.696e-1868.12Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181855 ID=CN181855; Name=CN181855; organism=Citrus sinensis; type=EST; length=734bp
CCGTTTTTTCTGACTCGGTCAATTAATAATTAGAGCGTAGACATTCAACT
TCCCACCCGAGGAAGACAAAGAAGAAGGAGAAGGATTAGTAATAATTAGC
ACTAAAATTAAGCTAACACTAATACTTGTCAATAAGTTCAAAACATATTC
AGATGGGTCGTCAATAATTCGAAACAAAGGAAGACCCACCAAATCATATT
TACTACCGACCATATCTTAGACCTAAGACTTTGAACAATAATCATCTCGC
ACGCAACAAACTACAAATGTAAGCCCCCATCCATTCCGTACAACACACAT
CCCAACAGCCTTTACAAGAAGAGCACCATTTTTATGCATTGAAAAAATGA
CCATAACGCCCTTGCATGAGGAATACAATCACGATCGAGGACGGAGTGCA
TCAAAGGGTCCATGAGGGATGGCAGCAGCGGGGGCCCAAGGGTTGATGGG
GATGGGTCTGTGATGATTGGGAGCAGCCATCTGATGAGTAGGCCTAGCCG
GATCAACGGCTGATGCTGCAGCGGATGGTGGGACTGCCACACGCTCACAC
GAAGGACACATCGTAAGTGTTGTGGGTGGGGTCATTTGCATGTAGAACTG
CGGGGAAAGCTTCAGTGCTCTCAGCTCCTGAACTTCTTTCTGCAACCGCC
TGTTCTCCTCCGTCAGATTCTCACAGCATCTCTTCAAGAATTCGCAGTCA
ACCTCAGTTTGCTTCAATTTGGTCCTTGCCCTTC
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