CN181852

Overview
NameCN181852
Unique NameCN181852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181852_ssr397 microsatellite CN181852_ssr397:397..411. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1537 contig Csv1_Contig1537:18..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181852 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   78 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 311
            E + FVGGL++ T +  L   F  YG I E  ++ DRET RSRGFGFVTF + +  +DA+ GMNG+ +DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of CN181852 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.694e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3
Query:   78 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 311
            E + FVGGL++ T + +L + F  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CN181852 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.694e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3
Query:   78 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 311
            E + FVGGL++ T + +L + F  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CN181852 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.694e-15
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3
Query:   78 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 311
            E + FVGGL++ T + +L + F  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CN181852 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.301e-15
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 3
Query:   78 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 311
            E + F+GGL + T + SL + F  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+ +DGR I V++A
Sbjct:    4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
BLAST of CN181852 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.075e-14
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   78 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 311
            E + F+GGL + T +  L +AF  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81          
BLAST of CN181852 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.833e-14
Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 3
Query:   84 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 314
            R +VG L+W   D +L   F   G ++E+++I DR++GRS+GFGFVT    + ++ AI  +NG +LDGR I V+EA+
Sbjct:  258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334          
BLAST of CN181852 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.833e-14
Identity = 33/77 (42.86%), Postives = 55/77 (71.43%), Query Frame = 3
Query:   84 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 314
            R +VG L+W   D +L   F   G ++E+++I DR++GRS+GFGFVT+   + +++AI+ ++G +LDGR I V+EA+
Sbjct:  205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281          
BLAST of CN181852 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.394e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   78 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 311
            E + FVGGL + T + +L + F ++G I E  ++ DRET RSRGFGF+TF + +   DA+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82          
BLAST of CN181852 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.967e-14
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 3
Query:   78 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 311
            E + FVGGL + T + +L + F ++G I E  ++ DRET RSRGFGF+TF + +   D +  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82          
The following BLAST results are available for this feature:
BLAST of CN181852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CIRBP_RANCA2.828e-1550.00Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
CIRBP_RAT3.694e-1548.72Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_MOUSE3.694e-1548.72Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR3.694e-1548.72Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
CIRBB_XENLA6.301e-1548.72Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
CIRBA_XENLA1.075e-1448.72Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
ROC2_ARATH1.833e-1444.1629 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_ARATH1.833e-1442.86Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
RBM3_MOUSE2.394e-1447.44Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
RBM3_RAT6.967e-1446.15Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181852 ID=CN181852; Name=CN181852; organism=Citrus sinensis; type=EST; length=645bp
GCTGTCTCTAAGATTTTTCTTGTAATTTTTTCTTAGTCCCCATTTTAAGT
TTTCTCCTAATGGCTTCAGGCGATGTCGAGTTTAGGTGCTTCGTAGGCGG
CCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGAGGCCTTCGGTGCTT
ACGGCGATATCCTTGAATCGAAGATAATTAACGATCGCGAGACTGGAAGA
TCCAGAGGATTTGGATTCGTTACCTTCCGCGATGAGAAGTCGATGAGGGA
CGCGATCGAAGGCATGAACGGCCAGAATCTCGACGGCCGTAACATCACAG
TCAACGAGGCCCAGTCCCGCGGAAGCGGTGGCGGTGGCGGTGGTGGTTAC
GGAAGCCGCGGCGGTGGCGGATATGGAGGTGGTGGACGCCGTGAAAGTGG
TGGTGGTGGTGGATACGGTGGGAGCCGCGGATACGGAGGTGGCGGTGGTG
GAGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTGATGGTGGATAT
GGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGTGCTTCTGATGGCGG
CAGCTGGAGGAATTAGTGTTGTTTAGGATAAATTAGGAGCTATGTTATGG
TTTCGTGTTTTGATATTTTCCTTGGGTTATGTTGTGTCGTTTTGA
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