CN181848

Overview
NameCN181848
Unique NameCN181848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181848 vs. ExPASy Swiss-Prot
Match: RL10_NATPD (50S ribosomal protein L10e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.740e-20
Identity = 52/156 (33.33%), Postives = 87/156 (55.77%), Query Frame = 1
Query:   43 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRA 507
            M  +PA  YR I    Y +  +  G+P  K+  Y +G  +   +++   + L+  E+  +   +LEA+R++ N+ M K  G+D  + + +R  P  V+R NK  + AGADR+  GMR AFGK  GT AR+  G+ + ++ C   ++  A++A RRA
Sbjct:    1 MSDKPASMYRDIDKPAYTRREYITGIPGSKVAQYKMGNFEADPEDYEVQISLIVDEEVQIRHGSLEASRLSANRRMLKELGEDGDYKMILRKFPHQVIRENKQATGAGADRVSDGMRQAFGKIVGTAARINKGERVFTIWCHPEDADAAKDAFRRA 156          
BLAST of CN181848 vs. ExPASy Swiss-Prot
Match: RL10_NANEQ (50S ribosomal protein L10e OS=Nanoarchaeum equitans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 47/165 (28.48%), Postives = 84/165 (50.91%), Query Frame = 1
Query:   64 CYRQIKNKPYPK------SRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKML-SCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD-SNSHHAQEALRRAKFKFPGRQK 534
            CYR+++  PY +        +  G     +R++ +G   +   E+ +   LV+ E   +   A+EA R+  NKY+    GK  +   +R +P H+ R   ++   AGADR+  GMR +FG+P+G   ++  G+ LLS+   D + +   +  L+ A+ K P R +
Sbjct:    9 CYRKLE-VPYTRVSRSKNKNYIPGAKPTMVRLFHMGELTRNPSEWQYEASLVAKENHQIRDNAIEAIRVMVNKYLESTLGKKRYLFIIRKYPHHIYREKPVVGGYAGADRISQGMRLSFGRPKGRAVQIYEGEKLLSIFFDDITKAKDIKYFLQVARSKLPWRYR 172          
The following BLAST results are available for this feature:
BLAST of CN181848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_NATPD8.740e-2033.3350S ribosomal protein L10e OS=Natronomonas pharaon... [more]
RL10_NANEQ7.166e-1428.4850S ribosomal protein L10e OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181848 ID=CN181848; Name=CN181848; organism=Citrus sinensis; type=EST; length=574bp
GCAGAAAGAGAGAATAGCTGAGACCGAACACGAACGCTCGCCATGGGAAG
AAGACCGGCAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCAAAGT
CCCGCTTTTGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGATGTC
GGGATGAAGAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCTCGT
CAGTTGGGAGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCCGTA
TCGCTTGCAACAAGTACATGGCCAAGTACGCCGGCAAGGATGCTTTCCAT
TTGCGAGTGAGGGTGCACCCCTTCCATGTTCTGCGTATTAACAAGATGCT
TTCGTGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTTTTG
GAAAGCCCCAAGGAACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTGCTT
TCTGTCCGTTGCAAGGATAGTAACAGCCACCATGCTCAGGAGGCCCTTCG
CCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTTGTCAGCAGG
AAATGGGGATTTACCAAGTTCAGC
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