CN181847

Overview
NameCN181847
Unique NameCN181847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:166..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.983e-81
Identity = 109/133 (81.95%), Postives = 121/133 (90.98%), Query Frame = -3
Query:  152 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 550
            LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:   87 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          

HSP 2 Score: 97.8265 bits (242), Expect = 3.983e-81
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFH
Sbjct:   39 KKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 3.983e-81
Identity = 109/133 (81.95%), Postives = 121/133 (90.98%), Query Frame = -3
Query:  152 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 550
            LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:   87 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          

HSP 2 Score: 97.8265 bits (242), Expect = 3.983e-81
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFH
Sbjct:   39 KKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.056e-66
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = -3
Query:  155 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 550
            LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD N++HAQEALRRAKFKFP RQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLGCHG LA RQPGRAFLEA
Sbjct:   16 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAFLEA 147          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_DROME (60S ribosomal protein L10 OS=Drosophila melanogaster GN=Qm PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.836e-57
Identity = 82/121 (67.77%), Postives = 94/121 (77.69%), Query Frame = -3
Query:  188 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLA 550
            +R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R  Y   + +NR+ PDG N K    HGP+A
Sbjct:   87 IRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYRPEHGPIA 207          

HSP 2 Score: 72.4034 bits (176), Expect = 3.836e-57
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  V++FP CVHLVS E E +SSEALEA RI CNKY+ KY GKD FH
Sbjct:   39 KKATVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.521e-57
Identity = 78/122 (63.93%), Postives = 99/122 (81.15%), Query Frame = -3
Query:  185 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 550
            +RVRVHP+HVLRINKMLSCAGADRLQTGMRGAFGKP GT ARV IGQ++ S+R +D+   +  EALRR+ +KFPGRQKI+VS+KWGFT ++R  Y + K++ R++ DG N K++  HG LAQ
Sbjct:   87 MRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKPMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITNHGTLAQ 208          

HSP 2 Score: 74.3294 bits (181), Expect = 6.521e-57
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK   DEFP CVHL+S EKE +SSEA+EA RI+CNKY++K  GKD+FH
Sbjct:   39 KKASTDEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10L_MACFA (60S ribosomal protein L10-like OS=Macaca fascicularis GN=RPL10L PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.203e-56
Identity = 81/120 (67.50%), Postives = 97/120 (80.83%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++PDG   K +  HGPL
Sbjct:   87 MRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKRLIPDGCGVKYVPSHGPL 206          

HSP 2 Score: 66.6254 bits (161), Expect = 3.203e-56
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  G+D FH
Sbjct:   39 KKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_SHEEP (60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.203e-56
Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   87 IRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          

HSP 2 Score: 67.781 bits (164), Expect = 3.203e-56
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH
Sbjct:   39 KKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_PIG (60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 3.203e-56
Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   87 IRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          

HSP 2 Score: 67.781 bits (164), Expect = 3.203e-56
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH
Sbjct:   39 KKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_BOVIN (60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4)

HSP 1 Score: 172.17 bits (435), Expect = 3.203e-56
Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   87 IRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          

HSP 2 Score: 67.781 bits (164), Expect = 3.203e-56
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH
Sbjct:   39 KKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_RAT (60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 5.444e-56
Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   87 IRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          

HSP 2 Score: 67.781 bits (164), Expect = 5.444e-56
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH
Sbjct:   39 KKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFH 86          
The following BLAST results are available for this feature:
BLAST of CN181847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL101_ORYSJ3.983e-8181.9560S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI3.983e-8181.9560S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL10_TOBAC4.056e-6692.4260S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_DROME3.836e-5767.7760S ribosomal protein L10 OS=Drosophila melanogast... [more]
RL10_DICDI6.521e-5763.9360S ribosomal protein L10 OS=Dictyostelium discoid... [more]
RL10L_MACFA3.203e-5667.5060S ribosomal protein L10-like OS=Macaca fascicula... [more]
RL10_SHEEP3.203e-5667.5060S ribosomal protein L10 OS=Ovis aries GN=RPL10 P... [more]
RL10_PIG3.203e-5667.5060S ribosomal protein L10 OS=Sus scrofa GN=RPL10 P... [more]
RL10_BOVIN3.203e-5667.5060S ribosomal protein L10 OS=Bos taurus GN=RPL10 P... [more]
RL10_RAT5.444e-5667.5060S ribosomal protein L10 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181847 ID=CN181847; Name=CN181847; organism=Citrus sinensis; type=EST; length=696bp
AAACAACTGCAAGGATCACATAGTTAAACCAAAGAAACATGTCACTTCAA
CTTGAGAAATCCAGTTCAACTGAGAAAAGGTACGAAATGGAAAATAATAA
ACTAGACAGTAGACCCAGCTCTGCTATTTTGAGACAGTAAATATCTTAGG
TTGTTGCTTCCAGGAAAGCTCTTCCAGGTTGACGTTGAGCCAAAGGACCA
TGACATCCGAGAAGCTTGGCATTCACACCATCTGGGACAATCCTGTTCTC
CGACTTCCACCGCAGATAATCAGCACGGCTGAACTTGGTAAATCCCCATT
TCCTGCTGACAATAATCTTTTGACGACCAGGAAACTTGAACTTAGCACGG
CGAAGGGCCTCCTGAGCATGGTGGCTGTTACTATCCTTGCAACGGACAGA
AAGCAAGACCTGCCCGATAGCAACACGAGCACAGGTTCCTTGGGGCTTTC
CAAAAGCACCCCTCATTCCAGTCTGGAGCCTATCAGCCCCAGCACACGAA
AGCATCTTGTTAATACGCAGAACATGGAAGGGGTGCACCCTCACTCGCAA
AATGGAAAGCATCCTTGCCGGCGTACTTGGCCATGTACTTGTTGCAAGCG
ATACGGGCAGCTTCCAAGGCCTCGCTCGACACGTTCTCCTTCTCCCAACT
GACGAGGTGAACGCAGAAGGGGAACTCGTCGACGCCTTTCTTCTTC
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