CN181847

Overview
NameCN181847
Unique NameCN181847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_PAPAN (60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.444e-56
Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   87 IRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          

HSP 2 Score: 67.781 bits (164), Expect = 5.444e-56
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH
Sbjct:   39 KKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_MOUSE (60S ribosomal protein L10 OS=Mus musculus GN=Rpl10 PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 5.444e-56
Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   87 IRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          

HSP 2 Score: 67.781 bits (164), Expect = 5.444e-56
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH
Sbjct:   39 KKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_MACFA (60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.444e-56
Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   87 IRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          

HSP 2 Score: 67.781 bits (164), Expect = 5.444e-56
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH
Sbjct:   39 KKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_HUMAN (60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4)

HSP 1 Score: 171.4 bits (433), Expect = 5.444e-56
Identity = 81/120 (67.50%), Postives = 96/120 (80.00%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:   87 IRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          

HSP 2 Score: 67.781 bits (164), Expect = 5.444e-56
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH
Sbjct:   39 KKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_PONAB (60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 1.206e-55
Identity = 81/120 (67.50%), Postives = 95/120 (79.17%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K     GPL
Sbjct:   87 IRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYTPNRGPL 206          

HSP 2 Score: 67.781 bits (164), Expect = 1.206e-55
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH
Sbjct:   39 KKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.673e-55
Identity = 83/122 (68.03%), Postives = 94/122 (77.05%), Query Frame = -3
Query:  185 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 550
            LRVR HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG  ARV IG +L S+R K+ N  HA EA RRAKFKFPGRQ I+ SRKWGFTK+ R DY R ++E R+  DGV  +L   HGPL +
Sbjct:   87 LRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTK 208          

HSP 2 Score: 67.781 bits (164), Expect = 2.673e-55
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            K+  VD FP CVH++S E+E++SSEALEAARI  NKYM K  GKD FH
Sbjct:   39 KRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_CHICK (60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.673e-55
Identity = 79/120 (65.83%), Postives = 95/120 (79.17%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV +GQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+   +    ++ R++PDG   K +   GPL
Sbjct:   82 IRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADAFEEMVAQKRLIPDGCGVKYVPGRGPL 201          

HSP 2 Score: 67.781 bits (164), Expect = 2.673e-55
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH
Sbjct:   34 KKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFH 81          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10L_BOVIN (60S ribosomal protein L10-like OS=Bos taurus GN=RPL10L PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.484e-55
Identity = 80/120 (66.67%), Postives = 96/120 (80.00%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++PDG   K +   GPL
Sbjct:   87 IRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAKKRLIPDGCGVKYVPNRGPL 206          

HSP 2 Score: 67.781 bits (164), Expect = 3.484e-55
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH
Sbjct:   39 KKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10B_SCHPO (60S ribosomal protein L10-B OS=Schizosaccharomyces pombe GN=rpl10b PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 4.540e-55
Identity = 79/123 (64.23%), Postives = 97/123 (78.86%), Query Frame = -3
Query:  182 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 550
            LRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G  ARV IGQVL+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:   87 LRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          

HSP 2 Score: 72.7886 bits (177), Expect = 4.540e-55
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = -2
Query:  531 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHFASEGAP 695
            K+ GVDEFP C+HLVS E E ++SEALEAARI  NKY+ K  GKD+FH      P
Sbjct:   39 KRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHP 93          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 5.918e-55
Identity = 78/123 (63.41%), Postives = 97/123 (78.86%), Query Frame = -3
Query:  182 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 550
            LRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G  ARV IGQ+L+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:   87 LRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          

HSP 2 Score: 72.7886 bits (177), Expect = 5.918e-55
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = -2
Query:  531 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHFASEGAP 695
            K+ GVDEFP C+HLVS E E ++SEALEAARI  NKY+ K  GKD+FH      P
Sbjct:   39 KRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHP 93          
The following BLAST results are available for this feature:
BLAST of CN181847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL10_PAPAN5.444e-5667.5060S ribosomal protein L10 OS=Papio anubis GN=RPL10... [more]
RL10_MOUSE5.444e-5667.5060S ribosomal protein L10 OS=Mus musculus GN=Rpl10... [more]
RL10_MACFA5.444e-5667.5060S ribosomal protein L10 OS=Macaca fascicularis G... [more]
RL10_HUMAN5.444e-5667.5060S ribosomal protein L10 OS=Homo sapiens GN=RPL10... [more]
RL10_PONAB1.206e-5567.5060S ribosomal protein L10 OS=Pongo abelii GN=RPL10... [more]
RL10_CAEEL2.673e-5568.0360S ribosomal protein L10 OS=Caenorhabditis elegan... [more]
RL10_CHICK2.673e-5565.8360S ribosomal protein L10 (Fragment) OS=Gallus gal... [more]
RL10L_BOVIN3.484e-5566.6760S ribosomal protein L10-like OS=Bos taurus GN=RP... [more]
RL10B_SCHPO4.540e-5564.2360S ribosomal protein L10-B OS=Schizosaccharomyces... [more]
RL10A_SCHPO5.918e-5563.4160S ribosomal protein L10-A OS=Schizosaccharomyces... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001J04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181847 ID=CN181847; Name=CN181847; organism=Citrus sinensis; type=EST; length=696bp
AAACAACTGCAAGGATCACATAGTTAAACCAAAGAAACATGTCACTTCAA
CTTGAGAAATCCAGTTCAACTGAGAAAAGGTACGAAATGGAAAATAATAA
ACTAGACAGTAGACCCAGCTCTGCTATTTTGAGACAGTAAATATCTTAGG
TTGTTGCTTCCAGGAAAGCTCTTCCAGGTTGACGTTGAGCCAAAGGACCA
TGACATCCGAGAAGCTTGGCATTCACACCATCTGGGACAATCCTGTTCTC
CGACTTCCACCGCAGATAATCAGCACGGCTGAACTTGGTAAATCCCCATT
TCCTGCTGACAATAATCTTTTGACGACCAGGAAACTTGAACTTAGCACGG
CGAAGGGCCTCCTGAGCATGGTGGCTGTTACTATCCTTGCAACGGACAGA
AAGCAAGACCTGCCCGATAGCAACACGAGCACAGGTTCCTTGGGGCTTTC
CAAAAGCACCCCTCATTCCAGTCTGGAGCCTATCAGCCCCAGCACACGAA
AGCATCTTGTTAATACGCAGAACATGGAAGGGGTGCACCCTCACTCGCAA
AATGGAAAGCATCCTTGCCGGCGTACTTGGCCATGTACTTGTTGCAAGCG
ATACGGGCAGCTTCCAAGGCCTCGCTCGACACGTTCTCCTTCTCCCAACT
GACGAGGTGAACGCAGAAGGGGAACTCGTCGACGCCTTTCTTCTTC
back to top