CN181847

Overview
NameCN181847
Unique NameCN181847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:166..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10L_MOUSE (60S ribosomal protein L10-like OS=Mus musculus GN=Rpl10l PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.922e-55
Identity = 80/120 (66.67%), Postives = 95/120 (79.17%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +  R++PDG   K +   GPL
Sbjct:   87 IRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAAKRLIPDGCGVKYIPERGPL 206          

HSP 2 Score: 67.781 bits (164), Expect = 5.922e-55
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH
Sbjct:   39 KKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 6.440e-54
Identity = 80/120 (66.67%), Postives = 96/120 (80.00%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++  ++PDG   K +  HGPL
Sbjct:   87 MRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPL 206          

HSP 2 Score: 62.003 bits (149), Expect = 6.440e-54
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP   H+VS E E +SSEALEAARI  NKYM K  G+D FH
Sbjct:   39 KKAKVDEFPLGGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.859e-53
Identity = 78/120 (65.00%), Postives = 92/120 (76.67%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            +R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ + + E R+  DG   +    HGPL
Sbjct:   87 IRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 206          

HSP 2 Score: 70.0922 bits (170), Expect = 1.859e-53
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            K+  VD+FP CVHLVS E E +SSEALEA RI CNKY+ K  GKD FH
Sbjct:   39 KRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.476e-52
Identity = 76/120 (63.33%), Postives = 88/120 (73.33%), Query Frame = -3
Query:  191 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 550
            LRVRVHPFHVLRINKMLSCAGADRLQ GMRGA+GKP G  ARV IGQ++ SVR KDSN     E LRRA++KFPG+QKII+S+KWGFT   R +YL+ +    +  DG   K L   G L
Sbjct:   87 LRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSL 206          

HSP 2 Score: 70.0922 bits (170), Expect = 4.476e-52
Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            KK  VDEFP CVHLVS E E +SSEALEAARI  NKYM   +G+DAFH
Sbjct:   39 KKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.246e-45
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = -3
Query:  167 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRA 550
            +RVRVHPFHV RINKMLSCAGADRLQ GMRGAFGKP G  ARV IGQ L+S+R K  +      AL+RA +KF GRQ I  S  WGFT+    +Y++WK E +   DGV+ K+L   G L + +  RA
Sbjct:   87 IRVRVHPFHVCRINKMLSCAGADRLQQGMRGAFGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVKWKEEGKFRVDGVSTKILRNRGRLHRAKRVRA 214          

HSP 2 Score: 61.6178 bits (148), Expect = 1.246e-45
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            +K   D FP   HL+S E+E + SEALEAARI  NKYM K AGK+A+H
Sbjct:   39 RKLNADTFPLTYHLISMEREQIGSEALEAARINANKYMIKNAGKEAYH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.223e-43
Identity = 67/108 (62.04%), Postives = 78/108 (72.22%), Query Frame = -3
Query:  227 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDG 550
            LR+RV+PFHVLRINKMLSCAGADRLQTGMRG+FGKP G  ARV   Q +LS+R K+S    A EALRRAK KFPG QKI VS K+GFT     ++ +     RI+  G
Sbjct:   87 LRIRVYPFHVLRINKMLSCAGADRLQTGMRGSFGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGFTNMFSDEFNKLNESGRIILRG 194          

HSP 2 Score: 65.4698 bits (158), Expect = 4.223e-43
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = -2
Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            +K GV EFP  V+ +S E+EN+S+EALEAARI  NKYM K+AGKD FH
Sbjct:   39 RKAGVLEFPLLVNCISNERENLSAEALEAARICANKYMVKHAGKDNFH 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_METKA (50S ribosomal protein L10e OS=Methanopyrus kandleri GN=rpl10e PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.117e-22
Identity = 46/83 (55.42%), Postives = 58/83 (69.88%), Query Frame = -3
Query:  302 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 550
            L++RV+P HVLR N + + AGADR+Q GMR AFGKP GT ARV  GQ +++VR    N  HA+EALRRA  KFP    I+V +
Sbjct:   84 LKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPFTIVVDK 166          

HSP 2 Score: 39.6614 bits (91), Expect = 1.117e-22
Identity = 18/42 (42.86%), Postives = 27/42 (64.29%), Query Frame = -2
Query:  552 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 677
            +F   V LV+ E+  V+  ALEAAR+A N+Y+ K  G+  +H
Sbjct:   42 DFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQNYH 83          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_HYPBU (50S ribosomal protein L10e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.783e-21
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = -3
Query:  311 RVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRR--AKFKFPGRQKII 547
            RVRV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV  GQ +L VR K  +  HA+EALRR  +K   P R ++I
Sbjct:   90 RVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASKLPLPSRIRVI 170          

HSP 2 Score: 30.4166 bits (67), Expect = 5.783e-21
Identity = 13/43 (30.23%), Postives = 24/43 (55.81%), Query Frame = -2
Query:  549 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHF 677
            ++ + V +   E+  +   ALEAAR+A +KY++   G   + F
Sbjct:   47 DYDYIVEVYVTERGQIRHNALEAARVAVHKYLSTTIGDQNYFF 89          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_AERPE (50S ribosomal protein L10e OS=Aeropyrum pernix GN=rpl10e PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.801e-21
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = -3
Query:  308 RVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIV 547
            R+RV+P HV+R NKM++ AGADRLQ GMR AFGKP GT ARV  G V+L V  +  +  + +EALRR   KFP   +I++
Sbjct:   87 RIRVYPHHVIRENKMMAFAGADRLQDGMRQAFGKPVGTAARVYPGTVVLEVWARKGDEENVKEALRRGASKFPLPSRIVI 166          

HSP 2 Score: 34.2686 bits (77), Expect = 9.801e-21
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = -2
Query:  549 LVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHF 656
            LV  E   +   ALEAARIA NKY+A   G   F+F
Sbjct:   51 LVMLEAGQIRHNALEAARIAVNKYLATTIGDKNFYF 86          
BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_THENV (50S ribosomal protein L10e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.739e-20
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = -3
Query:  299 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 550
            LR+   P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     K  +  H +EALRRA  K P   +I++  K
Sbjct:   88 LRLEAVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEAGQVIFYAEFKPEHVAHMKEALRRASTKLPLPTRIVIEAK 171          

HSP 2 Score: 37.3502 bits (85), Expect = 4.739e-20
Identity = 18/48 (37.50%), Postives = 25/48 (52.08%), Query Frame = -2
Query:  531 FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHFASEGAP 674
            FP    LV  E+  +  +ALEAAR    KY++KY G   ++   E  P
Sbjct:   47 FPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVP 94          
The following BLAST results are available for this feature:
BLAST of CN181847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL10L_MOUSE5.922e-5566.6760S ribosomal protein L10-like OS=Mus musculus GN=... [more]
RL10L_HUMAN6.440e-5466.6760S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10_BOMMA1.859e-5365.0060S ribosomal protein L10 OS=Bombyx mandarina GN=R... [more]
RL10_YEAST4.476e-5263.3360S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10_EUGGR1.246e-4556.2560S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]
RL10_ENCCU4.223e-4362.0460S ribosomal protein L10 OS=Encephalitozoon cunic... [more]
RL10_METKA1.117e-2255.4250S ribosomal protein L10e OS=Methanopyrus kandler... [more]
RL10_HYPBU5.783e-2160.4950S ribosomal protein L10e OS=Hyperthermus butylic... [more]
RL10_AERPE9.801e-2153.7550S ribosomal protein L10e OS=Aeropyrum pernix GN=... [more]
RL10_THENV4.739e-2051.1950S ribosomal protein L10e OS=Thermoproteus neutro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181847 ID=CN181847; Name=CN181847; organism=Citrus sinensis; type=EST; length=696bp
AAACAACTGCAAGGATCACATAGTTAAACCAAAGAAACATGTCACTTCAA
CTTGAGAAATCCAGTTCAACTGAGAAAAGGTACGAAATGGAAAATAATAA
ACTAGACAGTAGACCCAGCTCTGCTATTTTGAGACAGTAAATATCTTAGG
TTGTTGCTTCCAGGAAAGCTCTTCCAGGTTGACGTTGAGCCAAAGGACCA
TGACATCCGAGAAGCTTGGCATTCACACCATCTGGGACAATCCTGTTCTC
CGACTTCCACCGCAGATAATCAGCACGGCTGAACTTGGTAAATCCCCATT
TCCTGCTGACAATAATCTTTTGACGACCAGGAAACTTGAACTTAGCACGG
CGAAGGGCCTCCTGAGCATGGTGGCTGTTACTATCCTTGCAACGGACAGA
AAGCAAGACCTGCCCGATAGCAACACGAGCACAGGTTCCTTGGGGCTTTC
CAAAAGCACCCCTCATTCCAGTCTGGAGCCTATCAGCCCCAGCACACGAA
AGCATCTTGTTAATACGCAGAACATGGAAGGGGTGCACCCTCACTCGCAA
AATGGAAAGCATCCTTGCCGGCGTACTTGGCCATGTACTTGTTGCAAGCG
ATACGGGCAGCTTCCAAGGCCTCGCTCGACACGTTCTCCTTCTCCCAACT
GACGAGGTGAACGCAGAAGGGGAACTCGTCGACGCCTTTCTTCTTC
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