CN181847 | Citrus Genome Database

Overview


Name	CN181847
Unique Name	CN181847
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	696

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig242	contig	Csv1_Contig242:166..860.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_THEVO (50S ribosomal protein L10e OS=Thermoplasma volcanium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.394e-17
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = -3

Query:  302 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 550
            L+V  +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV    V++  R  ++++H  + AL++A  K P   K+++++
Sbjct:   84 LKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYQNDVIMIGRTDEAHAHELKIALKKAAIKLPTPCKVVITK 166

HSP 2 Score: 35.4242 bits (80), Expect = 4.394e-17
Identity = 17/42 (40.48%), Postives = 26/42 (61.90%), Query Frame = -2

Query:  552 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 677
            +FP  + L++ E   V   ALEAAR++ N+ M + AG D F+
Sbjct:   42 DFPIEMQLIAMESCQVRHTALEAARVSVNRRMTEAAGLDNFY 83

[Close]

BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_UNCMA (50S ribosomal protein L10e OS=Uncultured methanogenic archaeon RC-I GN=rpl10e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.401e-17
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = -3

Query:  302 RVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 547
            +VRV+P  VLR NK  + AGADR+  GMR AFGK  GT ARV  GQ + ++    +N   A+EA+RRA  K P   +++V +
Sbjct:   85 KVRVYPHQVLRENKQATGAGADRVSDGMRRAFGKAVGTAARVYEGQGVFTIWVNRANFEKAKEAMRRAGHKLPTPYRVVVEK 166

HSP 2 Score: 36.1946 bits (82), Expect = 4.401e-17
Identity = 18/44 (40.91%), Postives = 25/44 (56.82%), Query Frame = -2

Query:  549 DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHF 680
            +E P  V LV  E   +  +ALEAARI+ N+Y+    GK  + F
Sbjct:   41 EELPIAVTLVVNETCQIRHDALEAARISANRYLLNDVGKTNYRF 84

[Close]

BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_THEAC (50S ribosomal protein L10e OS=Thermoplasma acidophilum GN=rpl10e PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.632e-16
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = -3

Query:  302 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 550
            L+V  +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV    V++  R  ++++   + ALR+A  K P   K+++++
Sbjct:   84 LKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYPDDVIMIARTDEAHAKELKTALRKAAIKLPTPCKVVITK 166

HSP 2 Score: 34.2686 bits (77), Expect = 1.632e-16
Identity = 17/42 (40.48%), Postives = 26/42 (61.90%), Query Frame = -2

Query:  552 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 677
            +FP  + LV+ E   +   ALEAAR++ N+ M + AG D F+
Sbjct:   42 DFPIEMRLVAEEPCQIRHTALEAARVSVNRRMTEAAGLDYFY 83

[Close]

BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_METMP (50S ribosomal protein L10e OS=Methanococcus maripaludis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.633e-16
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = -3

Query:  302 ILRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 553
            +  +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++       + A+EALRR   K P   KI+V++
Sbjct:   83 LFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166

HSP 2 Score: 33.4982 bits (75), Expect = 1.633e-16
Identity = 18/43 (41.86%), Postives = 24/43 (55.81%), Query Frame = -2

Query:  549 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHF 677
            EFP  V LVS     +   ALE++RIA NKY+    G+  + F
Sbjct:   42 EFPVQVQLVSKSDILIRHNALESSRIAGNKYILSECGRTGYLF 84

[Close]

BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_METM7 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.633e-16
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = -3

Query:  302 ILRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 553
            +  +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++       + A+EALRR   K P   KI+V++
Sbjct:   83 LFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166

HSP 2 Score: 33.4982 bits (75), Expect = 1.633e-16
Identity = 17/43 (39.53%), Postives = 25/43 (58.14%), Query Frame = -2

Query:  549 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHF 677
            EFP  V L+S     +   ALE++RIA NKY+ +  G+  + F
Sbjct:   42 EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLF 84

[Close]

BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_METM6 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.633e-16
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = -3

Query:  302 ILRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 553
            +  +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++       + A+EALRR   K P   KI+V++
Sbjct:   83 LFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166

HSP 2 Score: 33.4982 bits (75), Expect = 1.633e-16
Identity = 17/43 (39.53%), Postives = 25/43 (58.14%), Query Frame = -2

Query:  549 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHF 677
            EFP  V L+S     +   ALE++RIA NKY+ +  G+  + F
Sbjct:   42 EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLF 84

[Close]

BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_METM5 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.588e-16
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = -3

Query:  302 ILRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 553
            +  +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++       + A+EALRR   K P   KI+V++
Sbjct:   83 LFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPERFYAAKEALRRCSMKLPTACKIVVTK 166

HSP 2 Score: 32.3426 bits (72), Expect = 3.588e-16
Identity = 18/43 (41.86%), Postives = 24/43 (55.81%), Query Frame = -2

Query:  549 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHF 677
            EFP  V LVS     +   ALE++RIA NKY+    G+  + F
Sbjct:   42 EFPVEVQLVSKSDILIRHNALESSRIAGNKYIMGECGRTGYLF 84

[Close]

BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_SULAC (50S ribosomal protein L10e OS=Sulfolobus acidocaldarius GN=rpl10e PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.875e-16
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = -3

Query:  305 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVS 550
            L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G++++ VR K  +   A+EAL+ A  K P R KI +S
Sbjct:   85 LVVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARLEKLGELVMYVRVKKEHLEAAKEALKIASSKLPIRTKIEIS 167

HSP 2 Score: 29.261 bits (64), Expect = 7.875e-16
Identity = 12/34 (35.29%), Postives = 22/34 (64.71%), Query Frame = -2

Query:  576 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAK 677
            ++ + + L++ EK  +   ALEAAR+   KY++K
Sbjct:   42 DYDYELRLITTEKGQIRHNALEAARVIALKYLSK 75

[Close]

BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_CALMQ (50S ribosomal protein L10e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.924e-15
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = -3

Query:  299 LRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRK 550
            L++  +P HV+R NKML+ AGADRLQ GMR AFG P G   ++  G+VL+ V  +D N  HA+EAL RA+ K P   +I ++RK
Sbjct:   87 LKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFGVPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLPLPCRIELTRK 170

HSP 2 Score: 21.9422 bits (45), Expect = 2.924e-15
Identity = 15/48 (31.25%), Postives = 20/48 (41.67%), Query Frame = -2

Query:  552 KKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFH 695
            K K  + F     L   E   +   ALEAAR    KY++K      F+
Sbjct:   39 KAKDRERFTSVAVLRVLEGGQIRVNALEAARQMAYKYLSKVLTDQNFY 86

[Close]

BLAST of CN181847 vs. ExPASy Swiss-Prot
Match: RL10_METPE (50S ribosomal protein L10e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.924e-15
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = -3

Query:  302 RVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSR 547
            ++R +P HVLR NK  + AGADR+  GMR AFGK  GT ARV   Q + +V   +     +++ALR   +K P   ++++ R
Sbjct:   85 KIRTYPHHVLRENKQATGAGADRVSEGMRMAFGKAVGTAARVQPKQKVFTVYTNEQYIEKSKDALRHGGYKLPSPARLVIER 166

HSP 2 Score: 35.039 bits (79), Expect = 2.924e-15
Identity = 19/43 (44.19%), Postives = 23/43 (53.49%), Query Frame = -2

Query:  549 EFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHF 677
            EFP  + L   E   +   ALEAARIA N+ M    G+  FHF
Sbjct:   42 EFPVEISLEVLESCQIRHTALEAARIAINRKMMDQVGRANFHF 84

The following BLAST results are available for this feature:

BLAST of CN181847 vs. ExPASy Swiss-Prot

BLAST of CN181847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88


Match Name	E-value	Identity	Description
RL10_THEVO	4.394e-17	42.17	50S ribosomal protein L10e OS=Thermoplasma volcani...	[more]
RL10_UNCMA	4.401e-17	46.34	50S ribosomal protein L10e OS=Uncultured methanoge...	[more]
RL10_THEAC	1.632e-16	42.17	50S ribosomal protein L10e OS=Thermoplasma acidoph...	[more]
RL10_METMP	1.633e-16	42.86	50S ribosomal protein L10e OS=Methanococcus maripa...	[more]
RL10_METM7	1.633e-16	42.86	50S ribosomal protein L10e OS=Methanococcus maripa...	[more]
RL10_METM6	1.633e-16	42.86	50S ribosomal protein L10e OS=Methanococcus maripa...	[more]
RL10_METM5	3.588e-16	42.86	50S ribosomal protein L10e OS=Methanococcus maripa...	[more]
RL10_SULAC	7.875e-16	50.60	50S ribosomal protein L10e OS=Sulfolobus acidocald...	[more]
RL10_CALMQ	2.924e-15	50.00	50S ribosomal protein L10e OS=Caldivirga maquiling...	[more]
RL10_METPE	2.924e-15	40.24	50S ribosomal protein L10e OS=Methanosphaerula pal...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0001J04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN181847 ID=CN181847; Name=CN181847; organism=Citrus sinensis; type=EST; length=696bp
AAACAACTGCAAGGATCACATAGTTAAACCAAAGAAACATGTCACTTCAA
CTTGAGAAATCCAGTTCAACTGAGAAAAGGTACGAAATGGAAAATAATAA
ACTAGACAGTAGACCCAGCTCTGCTATTTTGAGACAGTAAATATCTTAGG
TTGTTGCTTCCAGGAAAGCTCTTCCAGGTTGACGTTGAGCCAAAGGACCA
TGACATCCGAGAAGCTTGGCATTCACACCATCTGGGACAATCCTGTTCTC
CGACTTCCACCGCAGATAATCAGCACGGCTGAACTTGGTAAATCCCCATT
TCCTGCTGACAATAATCTTTTGACGACCAGGAAACTTGAACTTAGCACGG
CGAAGGGCCTCCTGAGCATGGTGGCTGTTACTATCCTTGCAACGGACAGA
AAGCAAGACCTGCCCGATAGCAACACGAGCACAGGTTCCTTGGGGCTTTC
CAAAAGCACCCCTCATTCCAGTCTGGAGCCTATCAGCCCCAGCACACGAA
AGCATCTTGTTAATACGCAGAACATGGAAGGGGTGCACCCTCACTCGCAA
AATGGAAAGCATCCTTGCCGGCGTACTTGGCCATGTACTTGTTGCAAGCG
ATACGGGCAGCTTCCAAGGCCTCGCTCGACACGTTCTCCTTCTCCCAACT
GACGAGGTGAACGCAGAAGGGGAACTCGTCGACGCCTTTCTTCTTC