CN181842

Overview
NameCN181842
Unique NameCN181842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:498..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_SYNSC (Elongation factor Tu OS=Synechococcus sp. (strain CC9605) GN=tuf PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.268e-63
Identity = 114/162 (70.37%), Postives = 137/162 (84.57%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGE +++VG+K+TR  TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   +     +MVMPGD ++M  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  238 KVGEEIEIVGIKDTRKTTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKPGSITPHTKFEGQVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVEMVMPGDNIQMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIE 399          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_SYNR3 (Elongation factor Tu OS=Synechococcus sp. (strain RCC307) GN=tuf PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.268e-63
Identity = 115/162 (70.99%), Postives = 137/162 (84.57%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGE +++VG+K+TR  TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++  +      +MVMPGD +KM  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  238 KVGEEIEIVGIKDTRKSTVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKPGSITPHTKFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTDRDGGNVEMVMPGDNIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVTKIIE 399          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_PROMP (Elongation factor Tu OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=tuf PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.268e-63
Identity = 117/162 (72.22%), Postives = 137/162 (84.57%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGE V++VG+++TR  TVTGVEMF+K LDE MAGDNVGLLLRGVQK DI+RGMVL K G+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  238 KVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHTKFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGANVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIE 399          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_PROM4 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9211) GN=tuf PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.268e-63
Identity = 117/162 (72.22%), Postives = 137/162 (84.57%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGE V++VG+K+TR  TVTGVEMF+K LDE MAGDNVGLLLRGVQK DI+RGMVL K G+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  II+
Sbjct:  238 KVGEEVEIVGIKDTRVTTVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHTKFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIK 399          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_PORYE (Elongation factor Tu, chloroplastic OS=Porphyra yezoensis GN=tufA PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.268e-63
Identity = 111/162 (68.52%), Postives = 139/162 (85.80%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VG+T+++VGL+ETR  T+TG+EMFQKTL+E +AGDN+G+LLRGVQK DI+RGMVLAKPGTITPHT+F A VY+L KEEGGRH+PFF GYRPQFY+RTTDVTG ++    D   +++MVMPGDR+KM  ELI  +A EQGMRFAIREGG+TVGAGV+  I++
Sbjct:  248 KVGDTIEIVGLRETRTTTITGLEMFQKTLEEGLAGDNIGILLRGVQKKDIERGMVLAKPGTITPHTQFEAEVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGTINQFTADDGTDAEMVMPGDRIKMTAELINAIAIEQGMRFAIREGGRTVGAGVVSKILK 409          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_PORPU (Elongation factor Tu, chloroplastic OS=Porphyra purpurea GN=tufA PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.268e-63
Identity = 111/162 (68.52%), Postives = 139/162 (85.80%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VG+T+++VGL+ETR  T+TG+EMFQKTL+E +AGDN+G+LLRGVQK DI+RGMVLAKPGTITPHT+F A VY+L KEEGGRH+PFF GYRPQFY+RTTDVTG ++    D   +++MVMPGDR+KM  ELI  +A EQGMRFAIREGG+TVGAGV+  I++
Sbjct:  248 KVGDTIEIVGLRETRTTTITGLEMFQKTLEEGLAGDNIGILLRGVQKKDIERGMVLAKPGTITPHTQFEAEVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGTINQFTADDGTDAEMVMPGDRIKMTAELINAIAIEQGMRFAIREGGRTVGAGVVSKILK 409          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_GLOVI (Elongation factor Tu OS=Gloeobacter violaceus GN=tufA PE=3 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 5.574e-63
Identity = 109/162 (67.28%), Postives = 142/162 (87.65%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGET++LVG++ TR+ TVTG+EMFQK+LDE +AGDN+G+LLRG++K D++RGMVLAKPG+ITPHT+F   VY+L KEEGGRH+PFFAGYRPQFY+RTTDVTG + +  +D+ + ++MVMPGDR+KM VELI P+A E GMRFAIREGG+TVGAGV+  I++
Sbjct:  248 KVGETIELVGIRGTRSTTVTGLEMFQKSLDEGLAGDNIGVLLRGIKKEDVERGMVLAKPGSITPHTQFEGEVYILSKEEGGRHTPFFAGYRPQFYVRTTDVTGTIVTFTDDEGKSAEMVMPGDRIKMTVELINPIAIEDGMRFAIREGGRTVGAGVVSKILK 409          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_CYAA5 (Elongation factor Tu OS=Cyanothece sp. (strain ATCC 51142) GN=tuf PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.280e-63
Identity = 112/162 (69.14%), Postives = 137/162 (84.57%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGET+++VG+++TR+ TVTGVEMFQKTLDE MAGDNVGLLLRG++K DI+RGMV+AKPG+ITPHT+F   VYVL KEEGGRH+PFF  YRPQFY+RTTDVTG +     D     +MVMPGDR+KM VELI P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  248 KVGETIEIVGIRDTRSTTVTGVEMFQKTLDEGMAGDNVGLLLRGIKKEDIERGMVIAKPGSITPHTQFEGEVYVLTKEEGGRHTPFFKNYRPQFYVRTTDVTGTIQDYTADDGSAVEMVMPGDRIKMTVELISPIAIEQGMRFAIREGGRTIGAGVVSKILK 409          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_SPIPL (Elongation factor Tu OS=Spirulina platensis GN=tuf PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.242e-62
Identity = 112/161 (69.57%), Postives = 135/161 (83.85%), Query Frame = -3
Query:  217 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 699
            +VG+TV+L+G+K+TR  TVTG EMFQKTL+E MAGDNVGLLLRG+QK D+QRGMV+AKP +ITPHTKF A VY+LKKEEGGRH+PFF GYRPQFY+RTTDVTG +     D     +MV+PGDR+ M V+LI P+A EQGMRFAIREGG+TVGAGV+  I+
Sbjct:  249 KVGDTVELIGIKDTRTTTVTGAEMFQKTLEEGMAGDNVGLLLRGIQKNDVQRGMVIAKPKSITPHTKFEAEVYILKKEEGGRHTPFFKGYRPQFYVRTTDVTGTIDEFTADDGSTPEMVIPGDRINMTVQLICPIAIEQGMRFAIREGGRTVGAGVVAKIL 409          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_PROM2 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9215) GN=tuf PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.242e-62
Identity = 115/162 (70.99%), Postives = 138/162 (85.19%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGE V++VG+++TR  TVTGVEMF+K LDE MAGDNVGLLLRGVQK DI+RGMVL K G+ITPHT+F   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++  +D     +MVMPGDR+KM  ELI PVA EQGMRFAIREGG+T+GAGV+  II+
Sbjct:  238 KVGEEVEIVGIRDTRLTTVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHTQFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIK 399          
The following BLAST results are available for this feature:
BLAST of CN181842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SYNSC4.268e-6370.37Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNR34.268e-6370.99Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_PROMP4.268e-6372.22Elongation factor Tu OS=Prochlorococcus marinus su... [more]
EFTU_PROM44.268e-6372.22Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PORYE4.268e-6368.52Elongation factor Tu, chloroplastic OS=Porphyra ye... [more]
EFTU_PORPU4.268e-6368.52Elongation factor Tu, chloroplastic OS=Porphyra pu... [more]
EFTU_GLOVI5.574e-6367.28Elongation factor Tu OS=Gloeobacter violaceus GN=t... [more]
EFTU_CYAA57.280e-6369.14Elongation factor Tu OS=Cyanothece sp. (strain ATC... [more]
EFTU_SPIPL1.242e-6269.57Elongation factor Tu OS=Spirulina platensis GN=tuf... [more]
EFTU_PROM21.242e-6270.99Elongation factor Tu OS=Prochlorococcus marinus (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181842 ID=CN181842; Name=CN181842; organism=Citrus sinensis; type=EST; length=701bp
GGTCATATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAG
TTCAATGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTG
GAAGTTCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAA
GTTTAACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTT
CCTAGTACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTC
TTTCCTCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGG
CATAATAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCT
TGGACTCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACA
TCAGTGGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGA
GTGCCTACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACT
TAGTATGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGA
ATATCAGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGC
CATTGCCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGA
AATTCCTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCCACCCTA
A
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