CN181842

Overview
NameCN181842
Unique NameCN181842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_BORBU (Elongation factor Tu OS=Borrelia burgdorferi GN=tuf PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.682e-51
Identity = 100/162 (61.73%), Postives = 123/162 (75.93%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VG+ V++VG+KETR  TVTGVEMFQK L++  AGDNVGLLLRGV K DI+RG VL+ PGTITPH KF A +Y L KEEGGRH PFF GYRPQF+ RTTDVTG V+       E  +MVMPGD V ++VELI  +A ++ + FA+REGG+TV +G I  I+E
Sbjct:  239 KVGQEVEIVGIKETRKTTVTGVEMFQKILEQGQAGDNVGLLLRGVDKKDIERGQVLSAPGTITPHKKFKASIYCLTKEEGGRHKPFFPGYRPQFFFRTTDVTGVVAL------EGKEMVMPGDNVDIIVELISSIAMDKNVEFAVREGGRTVASGRILEILE 394          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_ACICJ (Elongation factor Tu OS=Acidiphilium cryptum (strain JF-5) GN=tuf PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.682e-51
Identity = 99/160 (61.88%), Postives = 123/160 (76.88%), Query Frame = -3
Query:  220 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 699
            +VG+ V++VGLK T   TVTGVEMF+K LD+  AGDN+G LLRG ++ D++RG VLA PG+ITPHT F   VY+L KEEGGRH+PFF  YRPQFY RTTDVTG V+       E  +MVMPGD V + VELI P+A ++G+RFAIREGG+TVG+GV+ SI
Sbjct:  239 KVGDEVEIVGLKATVKTTVTGVEMFRKLLDQGEAGDNIGALLRGTKREDVERGQVLAAPGSITPHTNFSGSVYILNKEEGGRHTPFFTNYRPQFYFRTTDVTGVVT-----LPEGVEMVMPGDNVTVSVELIAPIAMDEGLRFAIREGGRTVGSGVVASI 393          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU2_WOLPM (Elongation factor Tu 2 OS=Wolbachia pipientis wMel GN=tuf2 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.682e-51
Identity = 95/162 (58.64%), Postives = 127/162 (78.40%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            + GE ++++GLK T+    TGVEMF+K LD+  AG NVG+LLRG ++ +++RG VLAKPGTITPH KF A VY+LKKEEGGRH+PFFA Y+PQFY+RTTDVTG +  +     +  +MVMPGD V + VEL +P+A ++G+RFAIREGG+TVG+GV+  I+E
Sbjct:  234 KTGEEIEIIGLKATQKTICTGVEMFKKLLDKGSAGLNVGILLRGTKREEVERGQVLAKPGTITPHRKFKAEVYILKKEEGGRHTPFFANYQPQFYLRTTDVTGSIKLL-----DGKEMVMPGDNVSVEVELQVPIAMDKGLRFAIREGGRTVGSGVVSEILE 390          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU1_WOLPM (Elongation factor Tu 1 OS=Wolbachia pipientis wMel GN=tuf1 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.682e-51
Identity = 95/162 (58.64%), Postives = 127/162 (78.40%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            + GE ++++GLK T+    TGVEMF+K LD+  AG NVG+LLRG ++ +++RG VLAKPGTITPH KF A VY+LKKEEGGRH+PFFA Y+PQFY+RTTDVTG +  +     +  +MVMPGD V + VEL +P+A ++G+RFAIREGG+TVG+GV+  I+E
Sbjct:  234 KTGEEIEIIGLKATQKTICTGVEMFKKLLDKGSAGLNVGILLRGTKREEVERGQVLAKPGTITPHRKFKAEVYILKKEEGGRHTPFFANYQPQFYLRTTDVTGSIKLL-----DGKEMVMPGDNVSVEVELQVPIAMDKGLRFAIREGGRTVGSGVVSEILE 390          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_THIDA (Elongation factor Tu OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.197e-51
Identity = 97/162 (59.88%), Postives = 124/162 (76.54%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGE +++VG+  T   T TGVEMF+K LD+  AGDNVG+LLRG ++ ++QRG VLAKPG+I PHTKF A +YVL K+EGGRH+PFF GYRPQFY RTTDVTG +     +    ++MVMPGD V + V LI P+A ++G+RFAIREGG+TVGAGV+  I E
Sbjct:  240 KVGEEIEIVGITPTVKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREEVQRGQVLAKPGSIKPHTKFSAEIYVLSKDEGGRHTPFFNGYRPQFYFRTTDVTGSI-----ELPAGTEMVMPGDNVSIKVSLIQPIAMDEGLRFAIREGGRTVGAGVVAKIEE 396          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_SHESA (Elongation factor Tu OS=Shewanella sp. (strain ANA-3) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.197e-51
Identity = 97/160 (60.62%), Postives = 123/160 (76.88%), Query Frame = -3
Query:  220 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 699
            RVG+ V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VL+KPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A ++G+RFAIREGG+TVGAGV+  I
Sbjct:  238 RVGDEVEIVGIRATTKTTCTGVEMFRKLLDEGRAGENCGILLRGTKRDDVERGQVLSKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMKVTLICPIAMDEGLRFAIREGGRTVGAGVVAKI 392          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_RHIL3 (Elongation factor Tu OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.197e-51
Identity = 95/162 (58.64%), Postives = 125/162 (77.16%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGE V++VG++ T   TVTGVEMF+K LD+  AGDN+G L+RGV +  ++RG +L KPG++ PH KF+A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD V + VELI+P+A E+ +RFAIREGG+TVGAG++ SI+E
Sbjct:  235 KVGEEVEIVGIRPTTKTTVTGVEMFRKLLDQGQAGDNIGALIRGVTRDGVERGQILCKPGSVKPHKKFMAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIVT-----LPEGTEMVMPGDNVTVSVELIVPIAMEEKLRFAIREGGRTVGAGIVASIVE 391          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_DESAH (Elongation factor Tu OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=tuf PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.197e-51
Identity = 100/162 (61.73%), Postives = 123/162 (75.93%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            + GE V+LVG+++T     TGVEMF+K LDE  AGDNVGLLLRG ++  ++RG V+AKPGTITPHTKF A +Y L KEEGGRH+PFF+GYRPQF+ RTTDVTG +S       E  +M+MPGD   +  ELI P+A E+ +RFAIREGG+TVGAGVI  IIE
Sbjct:  241 KTGEEVELVGIRDTTKTICTGVEMFRKLLDEGRAGDNVGLLLRGTKRDAVERGQVVAKPGTITPHTKFKAEIYCLSKEEGGRHTPFFSGYRPQFFFRTTDVTGVLS-----LPEGVEMIMPGDNAAITAELIAPIAMEKELRFAIREGGRTVGAGVIGEIIE 397          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_BARHE (Elongation factor Tu OS=Bartonella henselae GN=tuf1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.197e-51
Identity = 96/162 (59.26%), Postives = 124/162 (76.54%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGE V+++G++ T   TVTGVEMF+K LD+  AGDN+G LLRG+ +  I+RG VLAKP ++TPHT+F A  Y+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD V M V LI+P+A E+ +RFAIREGG+TVGAG++  IIE
Sbjct:  235 KVGEEVEIIGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALLRGIDREGIERGQVLAKPASVTPHTRFKAEAYILTKDEGGRHTPFFTNYRPQFYFRTTDVTGIVT-----LPEGTEMVMPGDNVAMDVSLIVPIAMEEKLRFAIREGGRTVGAGIVSKIIE 391          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU1_SHESR (Elongation factor Tu 1 OS=Shewanella sp. (strain MR-7) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.197e-51
Identity = 97/160 (60.62%), Postives = 123/160 (76.88%), Query Frame = -3
Query:  220 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 699
            RVG+ V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VL+KPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KM V LI P+A ++G+RFAIREGG+TVGAGV+  I
Sbjct:  238 RVGDEVEIVGIRATTKTTCTGVEMFRKLLDEGRAGENCGILLRGTKRDDVERGQVLSKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMKVTLICPIAMDEGLRFAIREGGRTVGAGVVAKI 392          
The following BLAST results are available for this feature:
BLAST of CN181842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BORBU1.682e-5161.73Elongation factor Tu OS=Borrelia burgdorferi GN=tu... [more]
EFTU_ACICJ1.682e-5161.88Elongation factor Tu OS=Acidiphilium cryptum (stra... [more]
EFTU2_WOLPM1.682e-5158.64Elongation factor Tu 2 OS=Wolbachia pipientis wMel... [more]
EFTU1_WOLPM1.682e-5158.64Elongation factor Tu 1 OS=Wolbachia pipientis wMel... [more]
EFTU_THIDA2.197e-5159.88Elongation factor Tu OS=Thiobacillus denitrificans... [more]
EFTU_SHESA2.197e-5160.63Elongation factor Tu OS=Shewanella sp. (strain ANA... [more]
EFTU_RHIL32.197e-5158.64Elongation factor Tu OS=Rhizobium leguminosarum bv... [more]
EFTU_DESAH2.197e-5161.73Elongation factor Tu OS=Desulfobacterium autotroph... [more]
EFTU_BARHE2.197e-5159.26Elongation factor Tu OS=Bartonella henselae GN=tuf... [more]
EFTU1_SHESR2.197e-5160.63Elongation factor Tu 1 OS=Shewanella sp. (strain M... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181842 ID=CN181842; Name=CN181842; organism=Citrus sinensis; type=EST; length=701bp
GGTCATATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAG
TTCAATGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTG
GAAGTTCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAA
GTTTAACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTT
CCTAGTACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTC
TTTCCTCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGG
CATAATAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCT
TGGACTCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACA
TCAGTGGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGA
GTGCCTACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACT
TAGTATGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGA
ATATCAGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGC
CATTGCCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGA
AATTCCTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCCACCCTA
A
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