CN181842

Overview
NameCN181842
Unique NameCN181842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMF (Elongation factor Tu OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.796e-57
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = -3
Query:  217 VGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 696
            VG+ +++VGLKET+  T TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V+      +E  +MVMPG+ V + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  239 VGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVT-----LEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMB (Elongation factor Tu OS=Neisseria meningitidis serogroup B GN=tufA PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.796e-57
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = -3
Query:  217 VGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 696
            VG+ +++VGLKET+  T TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V+      +E  +MVMPG+ V + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  239 VGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVT-----LEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMA (Elongation factor Tu OS=Neisseria meningitidis serogroup A GN=tufA PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.796e-57
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = -3
Query:  217 VGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 696
            VG+ +++VGLKET+  T TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V+      +E  +MVMPG+ V + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  239 VGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVT-----LEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_NEIG1 (Elongation factor Tu OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.268e-56
Identity = 106/160 (66.25%), Postives = 130/160 (81.25%), Query Frame = -3
Query:  217 VGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 696
            VG+ +++VGLKET+  T TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V+      ++  +MVMPG+ V + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  239 VGDEIEIVGLKETQKTTCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVT-----LEKGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_CODFR (Elongation factor Tu, chloroplastic OS=Codium fragile GN=tufA PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.600e-56
Identity = 105/162 (64.81%), Postives = 132/162 (81.48%), Query Frame = -3
Query:  214 VGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE-ESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 696
            VG+TV+LVGLK T+   +TG+EMF KTL++++AGDNVG+LLR +QK +IQRGMVLAKP +I PH  F A VY+LKKEEGGRH+ FFAGYRPQFY+RTTDVTG + +     D  + +MVMPGDR++M VELI P+A E  MRFAIREGGKTVGAGV+ +I++
Sbjct:  248 VGQTVELVGLKNTKEAIITGLEMFHKTLEKSVAGDNVGILLRRIQKEEIQRGMVLAKPSSILPHQHFKAQVYILKKEEGGRHTSFFAGYRPQFYVRTTDVTGHIKTFQGKIDNTQIQMVMPGDRIQMEVELIRPIAIETRMRFAIREGGKTVGAGVVTTIVQ 409          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSL (Elongation factor Tu OS=Geobacter sulfurreducens GN=tuf1 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.126e-55
Identity = 106/162 (65.43%), Postives = 128/162 (79.01%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGE V++VG+K T   TVTGVEMF+K LDE  AGDN+G LLRGV++ DI+RG VLAKPG+ITPHTKF A  Y+L KEEGGRH+PFF GYRPQFY RTTDVTG V     D    ++MVMPGD V + + LI P+A ++G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  240 KVGEEVEIVGIKATAKTTVTGVEMFRKLLDEGRAGDNIGALLRGVKREDIERGQVLAKPGSITPHTKFKAEAYILTKEEGGRHTPFFNGYRPQFYFRTTDVTGVV-----DLPAGTEMVMPGDNVAVTINLITPIAMDEGLRFAIREGGRTVGAGVVSSIIE 396          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_SORC5 (Elongation factor Tu OS=Sorangium cellulosum (strain So ce56) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.470e-55
Identity = 106/161 (65.84%), Postives = 126/161 (78.26%), Query Frame = -3
Query:  217 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 699
            +VG+ V ++G K+T+   VTGVEMF+K LD+  AGDNVG LLRGV+K +I+RG VLAKPG+ITPHTKF   VYVLKKEEGGRH+PFF  YRPQFY+RTTDVTG V     +  E  KMVMPGD + M +ELI PVA E+ MRFAIREGGKTVGAGV+  I+
Sbjct:  240 KVGDEVQIIGFKDTKKSVVTGVEMFRKLLDQGQAGDNVGCLLRGVEKEEIERGQVLAKPGSITPHTKFTGEVYVLKKEEGGRHTPFFTNYRPQFYIRTTDVTGTV-----NLPEGVKMVMPGDNITMTIELIAPVALEEQMRFAIREGGKTVGAGVVTKIL 395          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_PROA2 (Elongation factor Tu OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tuf PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.470e-55
Identity = 103/162 (63.58%), Postives = 128/162 (79.01%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            ++GE V++VG+K TR   VTG+EMFQKTLD+  AGDN G+L RGV K +++RGMV+AKPGTITPHTKF A VY+LKKEEGGRH+PFF  YRPQFY RTTDVTG V+       E  +MVMPGD + + VELI+P+A ++ +RFAIREGG+TVGAG +  IIE
Sbjct:  237 KIGEEVEIVGIKPTRKSVVTGIEMFQKTLDQGQAGDNAGILFRGVDKEELERGMVIAKPGTITPHTKFKAEVYILKKEEGGRHTPFFNNYRPQFYFRTTDVTGAVT-----LPEGVEMVMPGDNLSVEVELIVPIAMDENLRFAIREGGRTVGAGTVTQIIE 393          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_HERAU (Elongation factor Tu OS=Herpetosiphon aurantiacus GN=tuf PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.470e-55
Identity = 104/162 (64.20%), Postives = 131/162 (80.86%), Query Frame = -3
Query:  217 RVGETVDLVGL-KETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 699
            +VG+T++++G+  + R   VTGVEMF+K LDE  AGDNVG LLRG+++ D++RG VLAKPG+I PHTKF A VYVLKKEEGGRHSPFF+GYRPQFY+RTTDVTG +        E  +MVMPGD ++M VELI+PVA EQG++FAIREGG+TVGAG++  II
Sbjct:  243 KVGDTIEIIGMGPDVRTTAVTGVEMFKKLLDEGRAGDNVGALLRGIERTDVERGQVLAKPGSIKPHTKFKAEVYVLKKEEGGRHSPFFSGYRPQFYVRTTDVTGAIG-----LPEGVEMVMPGDNIQMTVELIVPVAIEQGLKFAIREGGRTVGAGIVPEII 399          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_CHRVO (Elongation factor Tu OS=Chromobacterium violaceum GN=tuf1 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.470e-55
Identity = 106/161 (65.84%), Postives = 129/161 (80.12%), Query Frame = -3
Query:  217 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 699
            +VGE +++VGLK+T   T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL K+EGGRH+PFFA YRPQFY RTTDVTG +S       E  +MVMPGD V++ VELI P+A E+G+RFAIREGG+TVGAGV+  II
Sbjct:  240 KVGEELEIVGLKDTVKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFEASVYVLSKDEGGRHTPFFANYRPQFYFRTTDVTGAISLA-----EGVEMVMPGDNVEIKVELIAPIAMEEGLRFAIREGGRTVGAGVVAKII 395          
The following BLAST results are available for this feature:
BLAST of CN181842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_NEIMF7.796e-5766.88Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU_NEIMB7.796e-5766.88Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU_NEIMA7.796e-5766.88Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU_NEIG12.268e-5666.25Elongation factor Tu OS=Neisseria gonorrhoeae (str... [more]
EFTU_CODFR6.600e-5664.81Elongation factor Tu, chloroplastic OS=Codium frag... [more]
EFTU_GEOSL1.126e-5565.43Elongation factor Tu OS=Geobacter sulfurreducens G... [more]
EFTU_SORC51.470e-5565.84Elongation factor Tu OS=Sorangium cellulosum (stra... [more]
EFTU_PROA21.470e-5563.58Elongation factor Tu OS=Prosthecochloris aestuarii... [more]
EFTU_HERAU1.470e-5564.20Elongation factor Tu OS=Herpetosiphon aurantiacus ... [more]
EFTU_CHRVO1.470e-5565.84Elongation factor Tu OS=Chromobacterium violaceum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181842 ID=CN181842; Name=CN181842; organism=Citrus sinensis; type=EST; length=701bp
GGTCATATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAG
TTCAATGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTG
GAAGTTCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAA
GTTTAACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTT
CCTAGTACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTC
TTTCCTCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGG
CATAATAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCT
TGGACTCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACA
TCAGTGGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGA
GTGCCTACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACT
TAGTATGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGA
ATATCAGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGC
CATTGCCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGA
AATTCCTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCCACCCTA
A
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