CN181842

Overview
NameCN181842
Unique NameCN181842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_COXBU (Elongation factor Tu OS=Coxiella burnetii GN=tufA PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.278e-55
Identity = 102/162 (62.96%), Postives = 130/162 (80.25%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VG+ +++VG+K+T   T TGVEMF+K LDE  AGDNVG+LLRG ++ +++RG VLAKPG+ITPH KF A +YVL KEEGGRH+PF  GYRPQFY RTTDVTG++ S+     E  +MVMPGD VK+ VELI PVA ++G+RFA+REGG+TVGAGV+  IIE
Sbjct:  240 KVGDEIEIVGIKDTTKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVLAKPGSITPHKKFEAEIYVLSKEEGGRHTPFLQGYRPQFYFRTTDVTGQLLSL----PEGIEMVMPGDNVKVTVELIAPVAMDEGLRFAVREGGRTVGAGVVTKIIE 397          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_COXBR (Elongation factor Tu OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.278e-55
Identity = 102/162 (62.96%), Postives = 130/162 (80.25%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VG+ +++VG+K+T   T TGVEMF+K LDE  AGDNVG+LLRG ++ +++RG VLAKPG+ITPH KF A +YVL KEEGGRH+PF  GYRPQFY RTTDVTG++ S+     E  +MVMPGD VK+ VELI PVA ++G+RFA+REGG+TVGAGV+  IIE
Sbjct:  240 KVGDEIEIVGIKDTTKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVLAKPGSITPHKKFEAEIYVLSKEEGGRHTPFLQGYRPQFYFRTTDVTGQLLSL----PEGIEMVMPGDNVKVTVELIAPVAMDEGLRFAVREGGRTVGAGVVTKIIE 397          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_COXBN (Elongation factor Tu OS=Coxiella burnetii (strain Dugway 5J108-111) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.278e-55
Identity = 102/162 (62.96%), Postives = 130/162 (80.25%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VG+ +++VG+K+T   T TGVEMF+K LDE  AGDNVG+LLRG ++ +++RG VLAKPG+ITPH KF A +YVL KEEGGRH+PF  GYRPQFY RTTDVTG++ S+     E  +MVMPGD VK+ VELI PVA ++G+RFA+REGG+TVGAGV+  IIE
Sbjct:  240 KVGDEIEIVGIKDTTKTTCTGVEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVLAKPGSITPHKKFEAEIYVLSKEEGGRHTPFLQGYRPQFYFRTTDVTGQLLSL----PEGIEMVMPGDNVKVTVELIAPVAMDEGLRFAVREGGRTVGAGVVTKIIE 397          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_ACTSZ (Elongation factor Tu OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.278e-55
Identity = 103/162 (63.58%), Postives = 129/162 (79.63%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            R G+ V++VG+K+T   TVTGVEMF+K LDE  AG+N+G LLRG ++ +I+RG VLAKPG+ITPHT F++ VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD VKM V LI P+A +QG+RFAIREGG+TVGAGV+ S+I+
Sbjct:  238 RTGDEVEIVGIKDTTKTTVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVLAKPGSITPHTDFVSEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVASVIK 394          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_MOOTA (Elongation factor Tu OS=Moorella thermoacetica (strain ATCC 39073) GN=tuf PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.587e-55
Identity = 106/163 (65.03%), Postives = 131/163 (80.37%), Query Frame = -3
Query:  214 RVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VG+ V+++GL+ E R   VTGVEMF+K LDEA+AGDN+G LLRGV + +++RGMVLAKPG+I PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG V     +  E  +MVMPGD ++M +ELI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  243 KVGDEVEIIGLRDEIRKTVVTGVEMFRKILDEAVAGDNIGTLLRGVDRKEVERGMVLAKPGSIKPHTKFNAEVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGVV-----NLPEGVEMVMPGDNIRMTIELITPIAIEEGLRFAIREGGRTVGAGVVTGIIE 400          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_CHLTE (Elongation factor Tu OS=Chlorobium tepidum GN=tuf PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.587e-55
Identity = 105/162 (64.81%), Postives = 127/162 (78.40%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VG+ V++VG+K T    VTG+EMFQKTLDE  AGDN GLLLRGV K  ++RGMV+AKPG+ITPHTKF A VY+LKKEEGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD + + VELI P+A E+ +RFAIREGG+TVGAG +  I+E
Sbjct:  237 KVGDEVEIVGIKPTAKSVVTGIEMFQKTLDEGQAGDNAGLLLRGVDKNALERGMVIAKPGSITPHTKFKAEVYILKKEEGGRHTPFFNGYRPQFYFRTTDVTGSVT-----LPEGVEMVMPGDNLSIDVELIAPIAMEESLRFAIREGGRTVGAGSVTKIVE 393          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_CHLL2 (Elongation factor Tu OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=tuf PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.587e-55
Identity = 103/162 (63.58%), Postives = 128/162 (79.01%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            ++ E V++VG+K TR   VTG+EMFQK LDE  AGDN GLLLRGV K +++RGMV+AKPG+I PHTKF A VY+L+KEEGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD + + VELI+P+A ++G+RFAIREGG+TVGAG +  IIE
Sbjct:  237 KINEEVEIVGIKPTRKSVVTGIEMFQKLLDEGQAGDNAGLLLRGVDKTELERGMVIAKPGSIKPHTKFKAEVYILRKEEGGRHTPFFNGYRPQFYFRTTDVTGSVT-----LPEGVEMVMPGDNLSVEVELIVPIAMDEGLRFAIREGGRTVGAGSVTKIIE 393          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_AERHH (Elongation factor Tu OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.587e-55
Identity = 103/161 (63.98%), Postives = 127/161 (78.88%), Query Frame = -3
Query:  217 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 699
            +VGE V++VG+K+T   T TGVEMF+K LDE  AG+N+G LLRGV++ D++RG VLAKPGTI PHTKF + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  238 KVGEEVEIVGIKDTTKTTCTGVEMFRKLLDEGRAGENIGALLRGVKREDVERGQVLAKPGTIKPHTKFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIAPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU1_THETN (Elongation factor Tu-A OS=Thermoanaerobacter tengcongensis GN=tufA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.587e-55
Identity = 106/163 (65.03%), Postives = 131/163 (80.37%), Query Frame = -3
Query:  214 RVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VG+ V+++GL  E+R   VTGVEMF+KTLDEA AGDN+G+LLRG+Q+ +++RG VLAKPGTI PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD V + VELI P+A E+G++FAIREGG+TVGAGV+ +IIE
Sbjct:  243 KVGDEVEIIGLTTESRKTVVTGVEMFRKTLDEAQAGDNIGVLLRGIQRDEVERGQVLAKPGTIKPHTKFEAQVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGTI-----QLPEGVEMVMPGDHVTLRVELITPIAMEEGLKFAIREGGRTVGAGVVSAIIE 400          
BLAST of CN181842 vs. ExPASy Swiss-Prot
Match: EFTU_NITOC (Elongation factor Tu OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.297e-55
Identity = 100/162 (61.73%), Postives = 128/162 (79.01%), Query Frame = -3
Query:  214 RVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 699
            +VGE +++VG++ET+    TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKP +ITPHTKF A VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +     D  +  +MVMPGD ++M V LI P+A E+G+RFA+REGG+TVGAGV+  +IE
Sbjct:  240 KVGEEIEIVGMRETQKTICTGVEMFRKLLDEGRAGDNVGVLLRGTKREDVERGQVLAKPKSITPHTKFYAEVYVLSKDEGGRHTPFFTGYRPQFYFRTTDVTGAI-----DLPDGVEMVMPGDNIQMTVSLIAPIAMEEGLRFAVREGGRTVGAGVVSKVIE 396          
The following BLAST results are available for this feature:
BLAST of CN181842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_COXBU4.278e-5562.96Elongation factor Tu OS=Coxiella burnetii GN=tufA ... [more]
EFTU_COXBR4.278e-5562.96Elongation factor Tu OS=Coxiella burnetii (strain ... [more]
EFTU_COXBN4.278e-5562.96Elongation factor Tu OS=Coxiella burnetii (strain ... [more]
EFTU_ACTSZ4.278e-5563.58Elongation factor Tu OS=Actinobacillus succinogene... [more]
EFTU_MOOTA5.587e-5565.03Elongation factor Tu OS=Moorella thermoacetica (st... [more]
EFTU_CHLTE5.587e-5564.81Elongation factor Tu OS=Chlorobium tepidum GN=tuf ... [more]
EFTU_CHLL25.587e-5563.58Elongation factor Tu OS=Chlorobium limicola (strai... [more]
EFTU_AERHH5.587e-5563.98Elongation factor Tu OS=Aeromonas hydrophila subsp... [more]
EFTU1_THETN5.587e-5565.03Elongation factor Tu-A OS=Thermoanaerobacter tengc... [more]
EFTU_NITOC7.297e-5561.73Elongation factor Tu OS=Nitrosococcus oceani (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001J01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181842 ID=CN181842; Name=CN181842; organism=Citrus sinensis; type=EST; length=701bp
GGTCATATTGAATTATCACATGAACATTTTCCAACTAGACTTGACATGAG
TTCAATGCAAAATAAGAACAAAACTGCAAATTATATGACATTAGGTTCTG
GAAGTTCCTAGAATGGTGAAACTAATTCCATAAAAACTTAAGAATATGAA
GTTTAACACCGCTCAAAAAAGTAAAAGATAATCCACTGCCCATGAAAGTT
CCTAGTACTATCATTCAATGATGGACTGAATAACACCAGCTCCAACAGTC
TTTCCTCCTTCTCTGATGGCAAATCTCATCCCTTGCTCACAAGCCACTGG
CATAATAAGCTCCACAACCATCTTGACACGGTCGCCAGGCATAACCATCT
TGGACTCCTCGTCCTTGTCGTTCATAATAGAAGACACCCTTCCAGTCACA
TCAGTGGTCCTCATGTAAAATTGAGGCCTGTAACCCGCAAAGAAAGGTGA
GTGCCTACCACCTTCTTCCTTCTTCAACACATACACAATGGCCAGGAACT
TAGTATGGGGAGTAATTGTTCCGGGCTTGGCCAACACCATCCCTCTCTGA
ATATCAGCCTTTTGTACACCTCTAAGTAACAACCCGACATTATCCCCAGC
CATTGCCTCGTCTAGAGTCTTTTGAAACATTTCAACCCCAGTTACAGTGA
AATTCCTAGTTTCCTTCAATCCCACAAGATCAACAGTCTCTCCCACCCTA
A
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