CN181841

Overview
NameCN181841
Unique NameCN181841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:498..1165. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181841 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=ZB8 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.302e-58
Identity = 109/168 (64.88%), Postives = 130/168 (77.38%), Query Frame = -1
Query:  160 VAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 663
            VAKK L+  ++G+LH +RFCEKDLLK  DRE VFAY DDPCS  YPLM+KLR VLVE AL NG  E  A++S+F K+A FEEEL+  LP  +E AR  VENG+  IP+RI ECRSYPLYRFVRE LG+ +LTGEK  SPGEE +KV  A+ +GK IDP+LECL+EWNG
Sbjct:  540 VAKKTLSTNSTGDLHVARFCEKDLLKEIDREAVFAYADDPCSHNYPLMKKLRNVLVERALANGAAEFNADTSVFAKVAQFEEELRATLPGAIEAARAAVENGTAAIPSRITECRSYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNG 707          
BLAST of CN181841 vs. ExPASy Swiss-Prot
Match: PAL2_ORYSI (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. indica GN=ZB8 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.302e-58
Identity = 109/168 (64.88%), Postives = 130/168 (77.38%), Query Frame = -1
Query:  160 VAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 663
            VAKK L+  ++G+LH +RFCEKDLLK  DRE VFAY DDPCS  YPLM+KLR VLVE AL NG  E  A++S+F K+A FEEEL+  LP  +E AR  VENG+  IP+RI ECRSYPLYRFVRE LG+ +LTGEK  SPGEE +KV  A+ +GK IDP+LECL+EWNG
Sbjct:  540 VAKKTLSTNSTGDLHVARFCEKDLLKEIDREAVFAYADDPCSHNYPLMKKLRNVLVERALANGAAEFNADTSVFAKVAQFEEELRATLPGAIEAARAAVENGTAAIPSRITECRSYPLYRFVREELGTKYLTGEKTRSPGEELNKVLVAINEGKHIDPLLECLKEWNG 707          
BLAST of CN181841 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.592e-56
Identity = 106/170 (62.35%), Postives = 129/170 (75.88%), Query Frame = -1
Query:  160 SQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 669
            S+VA K LT     E +P RF E++LLK  DRE+VF+YIDDP +  YPLM KL+QVL E A  +  N+K  +  +F+KI AFE+ELK++LPKEVE+AR   ENG+P  PNRIKECRSYPLY+FVRE LG   LTGEK  SP EEF+KV+TAMCQ KIIDP+LECL +WNG
Sbjct:  536 SRVALKTLTTEDKEETNPFRFSEEELLKVVDREYVFSYIDDPLNVRYPLMPKLKQVLYEQAHTSVINDKNVSLLVFEKIGAFEDELKSLLPKEVESARVAYENGNPATPNRIKECRSYPLYKFVREELGIRLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLEDWNG 705          
BLAST of CN181841 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.547e-56
Identity = 109/170 (64.12%), Postives = 132/170 (77.65%), Query Frame = -1
Query:  160 SQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 669
            +QVAKKVLT+  +G+L  +RF EK+LL A DRE VF+Y DDPCSA YPLMQKLR VLVEHAL +G+ E  A  S+F KI  FEEEL++ LP+E+E AR  V NG+  + NRI E RS+PLYRFVRE LG  FLTGEK+ SPGEE +KVF  + QGK+IDPML+CL+EWNG
Sbjct:  528 TQVAKKVLTMNPTGDLSSARFSEKNLLTAIDREAVFSYADDPCSANYPLMQKLRAVLVEHALTSGDAEPEA--SVFSKITKFEEELRSALPREIEAARVAVANGTAPVANRIVESRSFPLYRFVREELGCVFLTGEKLKSPGEECNKVFLGISQGKLIDPMLDCLKEWNG 695          
BLAST of CN181841 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 4.336e-54
Identity = 101/129 (78.29%), Postives = 112/129 (86.82%), Query Frame = -1
Query:  283 SQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLG 669
            SQVAKKVLT+G +GELHPSRFCEKDLL+  DRE+VFAY DDPC  TYPLMQKLRQVLV+HALNNGE EK AN+SIFQKIA FE+ELK +LPKEVE+ R   ENG+ +IPNRIK CRSYPLYRFVRE LG
Sbjct:  536 SQVAKKVLTMGVNGELHPSRFCEKDLLRVVDREYVFAYADDPCLTTYPLMQKLRQVLVDHALNNGETEKNANTSIFQKIATFEDELKAILPKEVESVRVAFENGTMSIPNRIKACRSYPLYRFVREELG 664          
BLAST of CN181841 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.014e-51
Identity = 95/170 (55.88%), Postives = 121/170 (71.18%), Query Frame = -1
Query:  160 SQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNG 669
            SQVAKK L+ G +GEL P RFCEKDLL+  D EHVF+YIDDPC+A+YPL QKLR +LVEHA  N E EK  N+SIF KI  FE ELK  L  +V  AR++ + G+  +P+RI+ECRSYPLY FVR  LG+  L+G +  SPGE  + V+ A+ + K+I P+ +CL  W G
Sbjct:  544 SQVAKKTLSTGLNGELLPGRFCEKDLLQVVDNEHVFSYIDDPCNASYPLTQKLRNILVEHAFKNAEGEKDPNTSIFNKIPVFEAELKAQLEPQVSLARESYDKGTSPLPDRIQECRSYPLYEFVRNQLGTKLLSGTRTISPGEVIEVVYDAISEDKVIVPLFKCLDGWKG 713          
BLAST of CN181841 vs. ExPASy Swiss-Prot
Match: PAL3_ARATH (Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 6.275e-45
Identity = 96/171 (56.14%), Postives = 117/171 (68.42%), Query Frame = -1
Query:  157 SQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKTANSSIFQKIAAFEEELKTVLPKEVENARQTVENGSPTIPNRIKECRSYPLYRFVREGLGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 669
            S  AK VL +       P R  + D+L   +RE+VF+Y+DDP S T PLMQKLR VL + AL   E E     ++F+KI AFE ELK +LPKEVE  R   ENG+  + NRIK+CRSYPLYRFVR  L +  LTGE V SPGE+FDKVF A+ QGK+IDP+ ECL+EWNGA
Sbjct:  529 SHTAKSVLAI------EPFRKHD-DILGVVNREYVFSYVDDPSSLTNPLMQKLRHVLFDKALAEPEGE---TDTVFRKIGAFEAELKFLLPKEVERVRTEYENGTFNVANRIKKCRSYPLYRFVRNELETRLLTGEDVRSPGEDFDKVFRAISQGKLIDPLFECLKEWNGA 689          
BLAST of CN181841 vs. ExPASy Swiss-Prot
Match: PAL2_SOLTU (Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanum tuberosum GN=PAL-2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = -1
Query:  541 SQVAKKVLTVGASGELHPSRFCEKDLLKAADREHVFAYIDDPC 669
            SQVAK+ LT+G  GELHP+RFCEK+LL+  DRE++FAY DDPC
Sbjct:  548 SQVAKRTLTIGVLGELHPARFCEKELLRVVDREYLFAYADDPC 590          
The following BLAST results are available for this feature:
BLAST of CN181841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PAL2_ORYSJ1.302e-5864.88Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL2_ORYSI1.302e-5864.88Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PAL3_PHAVU1.592e-5662.35Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL1_ORYSJ3.547e-5664.12Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_HELAN4.336e-5478.29Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]
PALY_PINTA2.014e-5155.88Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PAL3_ARATH6.275e-4556.14Phenylalanine ammonia-lyase 3 OS=Arabidopsis thali... [more]
PAL2_SOLTU2.407e-1269.77Phenylalanine ammonia-lyase 2 (Fragment) OS=Solanu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181841 ID=CN181841; Name=CN181841; organism=Citrus sinensis; type=EST; length=669bp
GAGGCCTTAAATGAAAAAACCAATAGAAGTGATTGAAATATTACAGATGG
ATTTGTACCACTGACTCGCATGGGCAAATTCTATGAACACAAGAACACAA
GGGATTGAAGACCATGTTATTAAACAAAATAAAAACAACTAACAAATTGG
AAGAGGGGCGCCATTCCATTCCCTGAGACATTCCAGCATTGGATCAATGA
TCTTGCCCTGGCACATTGCTGTAAAAACTTTGTCAAATTCCTCGCCGGGC
GATGTAACTTTTTCCCCTGTTAGAAAATTAGACCCGAGCCCCTCCCTCAC
GAACCTGTACAACGGGTAAGACCTGCATTCTTTGATCCTGTTGGGAATTG
TTGGACTTCCATTCTCAACAGTCTGCCTGGCATTCTCAACTTCTTTCGGC
AAAACGGTTTTCAATTCCTCCTCAAAGGCTGCAATCTTCTGGAAGATTGA
AGAGTTGGCAGTCTTCTCGTTCTCTCCATTGTTCAGTGCGTGCTCAACAA
GTACTTGCCTTAGCTTTTGCATCAATGGATAGGTAGCACTGCAGGGGTCA
TCAATGTATGCAAAGACGTGTTCGCGATCAGCCGCTTTGAGCAGATCCTT
CTCACAGAATCTTGATGGATGAAGCTCTCCACTAGCACCGACGGTTAAGA
CTTTCTTAGCTACTTGGCT
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