CN181838

Overview
NameCN181838
Unique NameCN181838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_BOVIN (Aspartate aminotransferase, cytoplasmic OS=Bos taurus GN=GOT1 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 5.184e-24
Identity = 51/106 (48.11%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  298 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 615
            V   L D  ++ EWT  +K MADRI++MR +L   L A  TPG W+HI +QIGMF+FTGLN +QV ++  E HIY+   GRI+M GL++K + ++  +IH AVT++
Sbjct:  307 VARTLSDPELFNEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITEQIGMFSFTGLNPKQVEYLINEKHIYLLPSGRINMCGLTTKNLEYVATSIHEAVTKI 412          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATM_DICDI (Aspartate aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=aatA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.843e-24
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = -3
Query:  301 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 615
            V  ILKD  +  EW  ++K MADRII+MR+QL   L   G+  DWSHI  QIGMF FTGL  EQV  +  EYHIY+T +GRIS+AG++S  V +L  A+ AAVT+
Sbjct:  321 VQAILKDKELTNEWRSEVKGMADRIINMREQLVKYLKKHGSTRDWSHITTQIGMFCFTGLTPEQVDRLANEYHIYLTRNGRISIAGINSTNVEYLAKAM-AAVTK 424          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_PANTR (Aspartate aminotransferase, cytoplasmic OS=Pan troglodytes GN=GOT1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.155e-23
Identity = 50/106 (47.17%), Postives = 75/106 (70.75%), Query Frame = -3
Query:  298 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 615
            V + L +  +++EWT  +K MADRI+SMR +L   L A  TPG W+HI  QIGMF+FTGLN +QV ++  E HIY+   GRI+++GL++K + ++  +IH AVT++
Sbjct:  307 VASTLSNPELFEEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKI 412          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_RAT (Aspartate aminotransferase, cytoplasmic OS=Rattus norvegicus GN=Got1 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.508e-23
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = -3
Query:  301 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTR 615
            V T L +  ++KEW   +K MADRI++MR +L   L A  TPG WSHI +QIGMF+FTGLN +QV ++  E HIY+   GRI+M GL++K + ++  +I+ AVT+
Sbjct:  307 VATTLSNPELFKEWKGNVKTMADRILTMRSELRARLEALKTPGTWSHITEQIGMFSFTGLNPKQVEYLVNEKHIYLMPSGRINMCGLTTKNLDYVATSINEAVTK 411          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_HUMAN (Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.573e-23
Identity = 49/106 (46.23%), Postives = 75/106 (70.75%), Query Frame = -3
Query:  298 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 615
            V + L +  +++EWT  +K MADRI++MR +L   L A  TPG W+HI  QIGMF+FTGLN +QV ++  E HIY+   GRI+++GL++K + ++  +IH AVT++
Sbjct:  307 VASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKI 412          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATM_CHICK (Aspartate aminotransferase, mitochondrial OS=Gallus gallus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23
Identity = 54/97 (55.67%), Postives = 66/97 (68.04%), Query Frame = -3
Query:  316 ILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIH 606
            IL    + KEW +++K MADRIISMR QL   L   G+  +W HI  QIGMF FTGL  EQV  +TKE+ IYMT DGRIS+AG++S  V +L  AIH
Sbjct:  323 ILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIH 419          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_PONAB (Aspartate aminotransferase, cytoplasmic OS=Pongo abelii GN=GOT1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23
Identity = 49/106 (46.23%), Postives = 75/106 (70.75%), Query Frame = -3
Query:  298 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVTRM 615
            V + L +  +++EWT  +K MADRI++MR +L   L A  TPG W+HI  QIGMF+FTGLN +QV ++  E HIY+   GRI+++GL++K + ++  +IH AVT++
Sbjct:  307 VASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKI 412          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_DICDI (Aspartate aminotransferase, cytoplasmic OS=Dictyostelium discoideum GN=aatB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23
Identity = 50/104 (48.08%), Postives = 69/104 (66.35%), Query Frame = -3
Query:  304 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVT 615
            V T+L D  +   W  +LK M+ RI  +RQ++ DAL AR  PG+W HI+ QIGMFT+TGL   QV  +  +YHIY+   GR+S+AGL++K + +  DAI  AVT
Sbjct:  332 VTTVLSDPELTALWVKELKEMSGRIKDVRQKVLDALIARKVPGNWEHIVNQIGMFTYTGLTKPQVDILVNKYHIYLLGSGRVSLAGLNNKNIDYFADAILDAVT 435          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATM_BOVIN (Aspartate aminotransferase, mitochondrial OS=Bos taurus GN=GOT2 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.389e-23
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = -3
Query:  316 TILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIH 609
            TIL    + K+W  ++K MADRIISMR QL   L   G+  +W HII QIGMF +TGL  EQV  +TKE+ IYMT DGRIS+AG++S  V +L  AIH
Sbjct:  329 TILTSPDLRKQWLHEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIIDQIGMFCYTGLKPEQVERLTKEFSIYMTKDGRISVAGVTSGNVAYLAHAIH 426          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATM_RAT (Aspartate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Got2 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 9.777e-23
Identity = 53/98 (54.08%), Postives = 66/98 (67.35%), Query Frame = -3
Query:  316 TILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIH 609
            TIL    + K+W  ++K MADRIISMR QL   L   G+  +W HI  QIGMF FTGL  EQV  +TKE+ +YMT DGRIS+AG++S  V +L  AIH
Sbjct:  329 TILTSPDLRKQWLQEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSVYMTKDGRISVAGVTSGNVGYLAHAIH 426          
The following BLAST results are available for this feature:
BLAST of CN181838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
AATC_BOVIN5.184e-2448.11Aspartate aminotransferase, cytoplasmic OS=Bos tau... [more]
AATM_DICDI8.843e-2454.29Aspartate aminotransferase, mitochondrial OS=Dicty... [more]
AATC_PANTR1.155e-2347.17Aspartate aminotransferase, cytoplasmic OS=Pan tro... [more]
AATC_RAT1.508e-2348.57Aspartate aminotransferase, cytoplasmic OS=Rattus ... [more]
AATC_HUMAN2.573e-2346.23Aspartate aminotransferase, cytoplasmic OS=Homo sa... [more]
AATM_CHICK3.360e-2355.67Aspartate aminotransferase, mitochondrial OS=Gallu... [more]
AATC_PONAB3.360e-2346.23Aspartate aminotransferase, cytoplasmic OS=Pongo a... [more]
AATC_DICDI3.360e-2348.08Aspartate aminotransferase, cytoplasmic OS=Dictyos... [more]
AATM_BOVIN4.389e-2355.10Aspartate aminotransferase, mitochondrial OS=Bos t... [more]
AATM_RAT9.777e-2354.08Aspartate aminotransferase, mitochondrial OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181838 ID=CN181838; Name=CN181838; organism=Citrus sinensis; type=EST; length=617bp
CTATAAAATAGTCACCAAACGTTTCAAGGAGAGTTAAAAATGTAAATGGC
ATCTCCCCAAAGATAAATGCAAAAATAAATAACATCGCAACTTTCGTTTT
TCTTCTACTTAATAAACATGTCAAGTTTTGGTGGAAAGACAAGAATACAA
CACCAAAACCAAAAGAACAAAATTTTCTTAATGTAAAACCTTTATTTATG
CATTTTCTAGTTCTACAAACTCATTTTTGCATTGCTGAGGGTGACTGAAA
ACCAAACAATTCTTACGGCATGAATTCTTGTCTGATTAATCTTAGCCCAT
TCGGGTTACAGCAGCATGTATAGCATCGGTAAGATGAGGAACTGTCTTTG
AACTAAGACCTGCCATGCTAATCCTCCCATCAGATGTCATATAAATGTGA
TACTCCTTGGTCATGAAGGCAACTTGTTCACTGTTCAGCCCTGTGAATGT
AAACATTCCTATTTGCTTGATAATGTGACTCCAGTCTCCTGGAGTGCCTC
TAGCAGACAGAGCATCAAATAGTTGCTGACGCATGCTTATAATCCGGTCA
GCCATCGCTTTCAGTTTCAGAGTCCACTCTTTATACATAGTGCTGTCCTT
GAGAATTGTAACCACAA
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