CN181838

Overview
NameCN181838
Unique NameCN181838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATM_HUMAN (Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = -3
Query:  316 ILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIH 606
            IL    + K+W  ++K MADRII MR QL   L   G+  +W HI  QIGMF FTGL  EQV  + KE+ IYMT DGRIS+AG++S  V +L  AIH
Sbjct:  330 ILNTPDLRKQWLQEVKGMADRIIGMRTQLVSNLKKEGSTHNWQHITDQIGMFCFTGLKPEQVERLIKEFSIYMTKDGRISVAGVTSSNVGYLAHAIH 426          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATM_XENTR (Aspartate aminotransferase, mitochondrial OS=Xenopus tropicalis GN=got2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = -3
Query:  316 ILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIH 606
            IL    + KEW  ++K MA+RIISMR+QL   L   G+  +W HI  QIGMF FTGL  EQV  + KE+ IYMT DGRIS+AG++S    +L  AIH
Sbjct:  327 ILTQPDLRKEWLQEVKGMANRIISMREQLVSNLKKEGSIHNWQHISDQIGMFCFTGLRPEQVERLIKEFSIYMTKDGRISVAGVTSANNGYLAHAIH 423          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_CAEEL (Probable aspartate aminotransferase, cytoplasmic OS=Caenorhabditis elegans GN=T01C8.5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.787e-16
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = -3
Query:  307 ILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 606
            +L      ++W   ++AM+ RI  MR  L   L   GTPG W HII+QIGMF++TGL S QV  +   + +++  DGRI++ GL++K V ++  AI   V
Sbjct:  302 VLTTPARREQWNQSIQAMSSRIKQMRAALLRHLMDLGTPGTWDHIIQQIGMFSYTGLTSAQVDHLIANHKVFLLRDGRINICGLNTKNVEYVAKAIDETV 401          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATM_SCHPO (Aspartate aminotransferase, mitochondrial OS=Schizosaccharomyces pombe GN=aat1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = -3
Query:  304 ILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSAR-GTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAVT 606
            IL +  + ++W  ++  M++R+ SMR+ L + L         W HI  QIGMF +TGLN +QV  + K+YHIY+T +GRIS++GL++  V +  +AI+A  +
Sbjct:  335 ILSNPALREQWAGEVVGMSERLKSMRKALRNILEKDLKNKHSWKHITDQIGMFCYTGLNPQQVDVLAKQYHIYLTKNGRISISGLNTSNVRYFAEAINAVTS 436          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC_YEAST (Aspartate aminotransferase, cytoplasmic OS=Saccharomyces cerevisiae GN=AAT2 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.280e-14
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = -3
Query:  307 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 615
            V  +L+   + ++W   +  M+ RI  MR  L D L   GTPG+W HI+ Q GMF+FTGL  + V  + + + +Y+ + GR S+AGL+   V ++  AI   V
Sbjct:  307 VAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVV 409          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC2_BOVIN (Putative aspartate aminotransferase, cytoplasmic 2 OS=Bos taurus GN=GOT1L1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 33/103 (32.04%), Postives = 63/103 (61.17%), Query Frame = -3
Query:  307 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 615
            + ++L +  M  EW   L+ + + ++  ++++ + L   GTPG W HI +Q G  ++ GLNS+QV ++  E HIY+  +GRI+   ++S  + ++T +I+ AV
Sbjct:  297 ITSVLCNPAMQGEWRQSLEGVVENVMMTKEKVKEKLRLLGTPGSWDHITEQKGSHSYLGLNSQQVEYLISEKHIYIPKNGRINFTCINSYNIDYITSSINEAV 399          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC2_MOUSE (Putative aspartate aminotransferase, cytoplasmic 2 OS=Mus musculus GN=Got1l1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.864e-14
Identity = 32/103 (31.07%), Postives = 62/103 (60.19%), Query Frame = -3
Query:  307 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 615
            + +IL +  ++ EW   LK + + ++ +++++ + L   GTPG W HI +Q G   + GL  +QV F+ K+ HIY+    RI+   ++++ + ++T +IH AV
Sbjct:  297 ITSILCNPALFGEWKQSLKGVVENMMLIKEKVKEKLRLLGTPGSWDHITRQSGTHGYLGLTYQQVEFLVKKKHIYLPKTSRINFTCINARNIDYITQSIHEAV 399          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AATC2_HUMAN (Putative aspartate aminotransferase, cytoplasmic 2 OS=Homo sapiens GN=GOT1L1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 32/103 (31.07%), Postives = 64/103 (62.14%), Query Frame = -3
Query:  307 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 615
            + +IL +  +  EW   LK + + I+  ++++ + L   GTPG W HI +Q G   + GLNS+QV ++ ++ HIY+  +G+I+ + +++  + ++T+ I+ AV
Sbjct:  297 ITSILCNPALLGEWKQSLKEVVENIMLTKEKVKEKLQLLGTPGSWGHITEQSGTHGYLGLNSQQVEYLVRKKHIYIPKNGQINFSCINANNINYITEGINEAV 399          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: AAT_HAEIN (Aspartate aminotransferase OS=Haemophilus influenzae GN=aspC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = -3
Query:  319 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAI 615
            V T+L D+ + +EW  +L  M +RI  MR      L   G   D+S II+Q GMF+F+GL  EQV  +  E+ IY    GRI++AG++   + +L ++I
Sbjct:  294 VATVLNDAQLRQEWENELTEMRERIKKMRHLFVQLLKEYGAEQDFSFIIEQNGMFSFSGLTGEQVDRLKNEFAIYAVRSGRINVAGITEDNIRYLCESI 392          
BLAST of CN181838 vs. ExPASy Swiss-Prot
Match: TYRB_SALTY (Aromatic-amino-acid aminotransferase OS=Salmonella typhimurium GN=tyrB PE=3 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = -3
Query:  307 VVTILKDSTMYKEWTLKLKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSKTVPHLTDAIHAAV 615
            V T+L D  +   W  ++ AM +RIISMRQ L   L A     ++ ++++Q GMF++TGL+ EQV  +  E+ +Y+ + GR+ +AGL++  V  +  A  A +
Sbjct:  295 VATVLGDEALKAGWLAEVDAMRNRIISMRQTLVKELKAEMPDRNFDYLLQQRGMFSYTGLSEEQVDRLRDEFGVYLIASGRMCVAGLNASNVHRVAKAFAAVM 397          
The following BLAST results are available for this feature:
BLAST of CN181838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
AATM_HUMAN2.408e-2152.58Aspartate aminotransferase, mitochondrial OS=Homo ... [more]
AATM_XENTR1.195e-2052.58Aspartate aminotransferase, mitochondrial OS=Xenop... [more]
AATC_CAEEL6.787e-1640.00Probable aspartate aminotransferase, cytoplasmic O... [more]
AATM_SCHPO1.975e-1539.22Aspartate aminotransferase, mitochondrial OS=Schiz... [more]
AATC_YEAST1.280e-1436.89Aspartate aminotransferase, cytoplasmic OS=Sacchar... [more]
AATC2_BOVIN2.851e-1432.04Putative aspartate aminotransferase, cytoplasmic 2... [more]
AATC2_MOUSE4.864e-1431.07Putative aspartate aminotransferase, cytoplasmic 2... [more]
AATC2_HUMAN1.084e-1331.07Putative aspartate aminotransferase, cytoplasmic 2... [more]
AAT_HAEIN3.152e-1338.38Aspartate aminotransferase OS=Haemophilus influenz... [more]
TYRB_SALTY5.377e-1335.92Aromatic-amino-acid aminotransferase OS=Salmonella... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181838 ID=CN181838; Name=CN181838; organism=Citrus sinensis; type=EST; length=617bp
CTATAAAATAGTCACCAAACGTTTCAAGGAGAGTTAAAAATGTAAATGGC
ATCTCCCCAAAGATAAATGCAAAAATAAATAACATCGCAACTTTCGTTTT
TCTTCTACTTAATAAACATGTCAAGTTTTGGTGGAAAGACAAGAATACAA
CACCAAAACCAAAAGAACAAAATTTTCTTAATGTAAAACCTTTATTTATG
CATTTTCTAGTTCTACAAACTCATTTTTGCATTGCTGAGGGTGACTGAAA
ACCAAACAATTCTTACGGCATGAATTCTTGTCTGATTAATCTTAGCCCAT
TCGGGTTACAGCAGCATGTATAGCATCGGTAAGATGAGGAACTGTCTTTG
AACTAAGACCTGCCATGCTAATCCTCCCATCAGATGTCATATAAATGTGA
TACTCCTTGGTCATGAAGGCAACTTGTTCACTGTTCAGCCCTGTGAATGT
AAACATTCCTATTTGCTTGATAATGTGACTCCAGTCTCCTGGAGTGCCTC
TAGCAGACAGAGCATCAAATAGTTGCTGACGCATGCTTATAATCCGGTCA
GCCATCGCTTTCAGTTTCAGAGTCCACTCTTTATACATAGTGCTGTCCTT
GAGAATTGTAACCACAA
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