CN181835

Overview
NameCN181835
Unique NameCN181835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181835_ssr37 microsatellite CN181835_ssr37:37..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9880 contig Csv1_Contig9880:65..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA1_DROME (Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.898e-57
Identity = 106/173 (61.27%), Postives = 134/173 (77.46%), Query Frame = 3
Query:  156 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            MFRNQYD+DVT WSP GRL QVEYAMEAVK G+A +GL++K + VL  + K  SELS  Q+KI  +DDH+G++IAGLTAD RVLSRY+RSEC+NY ++Y++  PV RL+  L +K Q  TQR  +RPYGVGLLVAG DE+G H+Y   PS  +F  +A +IGSRSQ+A+TYLE
Sbjct:    1 MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGTATVGLKNKDYAVLVALCKPTSELSDTQRKIIPIDDHLGISIAGLTADARVLSRYLRSECLNYKHSYDTTYPVSRLITNLGNKMQTTTQRYDRRPYGVGLLVAGYDERGPHIYQVTPSATFFNCKANSIGSRSQSARTYLE 173          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.151e-54
Identity = 97/166 (58.43%), Postives = 129/166 (77.71%), Query Frame = 3
Query:  177 TDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            +DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VD+HIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+ YLE
Sbjct:    7 SDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLE 172          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.095e-52
Identity = 100/173 (57.80%), Postives = 126/173 (72.83%), Query Frame = 3
Query:  156 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            MFRNQYD D TTWSP GRL QVEYA+EA+KQGSA +GL SKTH VL  + +   ELSS+QKK+ ++DDHIG+AIAGL  D RVLS YM+ E ++    +  P+PV RL+ ++A+KAQ+ TQ   +RPYGVG LV G DE G HL    PSG   EY   ++GSRSQ+A+TY+E
Sbjct:    1 MFRNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQKKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIE 173          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.467e-51
Identity = 96/174 (55.17%), Postives = 134/174 (77.01%), Query Frame = 3
Query:  156 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKAN-SELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            MF+NQYDT+ TTWSP GRLFQVEYA EAV  GSAA+G ++K  VVL  + ++  ++ SS+Q+K+FK+DDH+G+AIAGL ADGR+L+R++R+EC+NY Y ++S  P+  +   + +K Q   Q + KRP+GVGLL+AG D  G HLY+  PSG+ F+++A A+G RSQAA+TYLE
Sbjct:    1 MFKNQYDTNTTTWSPTGRLFQVEYANEAVNNGSAAVGAKNKDFVVLTALKRSPVAQFSSYQEKVFKLDDHVGMAIAGLVADGRMLARFVRTECMNYRYMHDSDNPLPLIAEIVGEKYQRHIQFAGKRPFGVGLLIAGYDSTGPHLYHTVPSGDVFDFKATAMGLRSQAARTYLE 174          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.902e-49
Identity = 97/174 (55.75%), Postives = 129/174 (74.14%), Query Frame = 3
Query:  156 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKAN-SELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            MF+NQYDTD TTWSP GRLFQVEYA EAV  GSAA+G++   +VVL  + +   S LSS+Q+K FK+D+H+G+AI+GL ADGR LSR++R+EC+NY Y ++S  P+  L   +  K Q   Q + KRP+GVGLL+AG D +G  LY   PSG+ F+++A A+G RSQAA+TYLE
Sbjct:    1 MFKNQYDTDTTTWSPTGRLFQVEYANEAVNNGSAAVGVKGADYVVLTALKRNPVSGLSSYQEKAFKLDEHVGMAISGLVADGRALSRFLRTECMNYRYMHDSDAPLVMLADIVGAKHQRHIQFAGKRPFGVGLLIAGYDRQGPRLYQTVPSGDVFDFKATAMGLRSQAARTYLE 174          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.238e-49
Identity = 88/173 (50.87%), Postives = 128/173 (73.99%), Query Frame = 3
Query:  156 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            MFRNQYD DVT WSP GRL QVEYA+EA+KQGSA +G++S+TH V+  + +A ++LSSHQKK++++D H GV+IAGL +DGR+L+RY+++EC ++ + Y+  +P+ +L   +  K Q  TQ   +RP+GVG+L+AG D+ GAH+    PS         +IG+RSQ+A+TYLE
Sbjct:    1 MFRNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQKKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLE 173          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.180e-47
Identity = 98/173 (56.65%), Postives = 116/173 (67.05%), Query Frame = 3
Query:  156 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            MFRN YD D  T+SP GRLFQVEYA+EA+KQGS  +GLRS TH VL  + +   ELSS+QKKI K D+H+G+++AGL  D RVLS Y+R +C   S  +   L V R    L DKAQ  TQ    RPYGVGLL+ G D+ GAHL    PSGN  E    AIG+RSQ AKTYLE
Sbjct:    1 MFRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLE 173          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.860e-37
Identity = 84/180 (46.67%), Postives = 116/180 (64.44%), Query Frame = 3
Query:  156 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL-SSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA------QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYL 671
            M R++YD  V T+SP GRLFQVEYA+EA+K GS AIG+++K  VVLG   +  S L  SH  +K+F++D HIG AI+GLTAD R +  + R +  N+ +TY+ P  +      + D A      +   +R   RP+GV LL+AG+DE G  LY++ PSG YF Y+A AIGS S+ AK+ L
Sbjct:    3 MTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSEL 182          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.496e-33
Identity = 78/170 (45.88%), Postives = 102/170 (60.00%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP GRLFQVEYA EAVK+G+ A+G++ +  VVLG   +  S+L   +  +K++++D HIG A AGL AD RVL    R E   Y YTY  P+ V  LV  + D  QV TQ    RP+G  LL+AG+D KG  L+   PSG   E++A AIG   Q A    E
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTKGCRLFETDPSGALTEHKATAIGEGRQEALDVFE 179          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.257e-33
Identity = 80/176 (45.45%), Postives = 107/176 (60.80%), Query Frame = 3
Query:  162 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA---QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIG+++K  VVL    +  S L   S  +KI ++DDHIG A++GL AD R L  + R E  N+ ++Y  P+ V      L D A       + S  RP+GV LL+AG DE G  LYY  PSG +++  A AIGS S+ A + L+
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180          
The following BLAST results are available for this feature:
BLAST of CN181835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA1_DROME1.898e-5761.27Proteasome subunit alpha type-1 OS=Drosophila mela... [more]
PSA1_CHICK1.151e-5458.43Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA1_SCHPO4.095e-5257.80Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA1_TRYCR3.467e-5155.17Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA1_TRYBR1.902e-4955.75Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA1_CAEEL4.238e-4950.87Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]
PSA1_YEAST5.180e-4756.65Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSA5_SCHPO4.860e-3746.67Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSMA_METKA2.496e-3345.88Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSA5B_ARATH4.257e-3345.45Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181835 ID=CN181835; Name=CN181835; organism=Citrus sinensis; type=EST; length=675bp
GAGGCTTGGCTTGAAGAAAAAGAAAACACTTTCTACTATTATTATTATTA
TTATTATTATTATTATTATTAAGACGGCTTTTGGTTGCAGTAGATTTACT
TGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAAACCC
TAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAGCCCC
GCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGCAAGG
CTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGCTGCG
TTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTTCAAG
GTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACGGCCG
TGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTACACTT
ACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGACAAG
GCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTGGCCT
GCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAACTGCC
CAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCGATCT
CAAGCTGCAAAGACATACTTGGAAC
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