CN181835

Overview
NameCN181835
Unique NameCN181835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.047e-27
Identity = 71/178 (39.89%), Postives = 105/178 (58.99%), Query Frame = 3
Query:  162 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA-----QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            R++YD  V T+SP GRLFQVEYA+EA+K GS AIG+++   V L    +  S L   S  +KI ++D HIG A++GL AD + L    R E  N+ +TY   + V  +   +++ A     +     +  RP+GV LL  G+DEKG  L++  PSG + +  A AIGS S+ A++ L+
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.047e-27
Identity = 71/178 (39.89%), Postives = 105/178 (58.99%), Query Frame = 3
Query:  162 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA-----QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            R++YD  V T+SP GRLFQVEYA+EA+K GS AIG+++   V L    +  S L   S  +KI ++D HIG A++GL AD + L    R E  N+ +TY   + V  +   +++ A     +     +  RP+GV LL  G+DEKG  L++  PSG + +  A AIGS S+ A++ L+
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.047e-27
Identity = 71/178 (39.89%), Postives = 105/178 (58.99%), Query Frame = 3
Query:  162 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA-----QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            R++YD  V T+SP GRLFQVEYA+EA+K GS AIG+++   V L    +  S L   S  +KI ++D HIG A++GL AD + L    R E  N+ +TY   + V  +   +++ A     +     +  RP+GV LL  G+DEKG  L++  PSG + +  A AIGS S+ A++ L+
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 68/173 (39.31%), Postives = 101/173 (58.38%), Query Frame = 3
Query:  168 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            +YD+  T +SP GRL+QVEYAMEA+      +G+ S   +V+    K   +L   S   +K++++ D+I   +AG+TAD  +L  ++R    +Y  +Y   +PV +LV  L ++ Q  TQ   KRP+GV LL  G D+  G  LY + PSGNY  ++A  IGS  QAA T L+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLK 176          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 67/175 (38.29%), Postives = 98/175 (56.00%), Query Frame = 3
Query:  156 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            M    Y   +TT+SP+G+L Q+EYA+ AV  G+ ++G+++   VVL    K  S L   Q   K+  +  HIG+  +G+  D RVL R  R     Y   Y+ P+P  +LV ++A   Q  TQ    RP+GV LL+AG DE   +L+ + PSG YF ++A A+G      KT+LE
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKATNGVVLATEKKQKSILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLE 175          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 68/172 (39.53%), Postives = 98/172 (56.98%), Query Frame = 3
Query:  165 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLE 674
            + Y   +TT+SP+G+L Q+EYA+ AVK G  ++GLR+K  VVL   N   S L+  Q K+ ++  HIG   +G+  D R+L +  R   + Y   Y   +P  +LV  +A   Q  TQ    RP+G  LL+AG D+  G  L + C PSG YF ++A A+G     AKT+LE
Sbjct:    3 DHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATEN-VGSVLTDDQPKVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLE 173          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 70/170 (41.18%), Postives = 96/170 (56.47%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP GRLFQVEYA EAVK+G+ A+G+++   VVL    +  S L   +  +KIF++DDHIG A +GL AD R L    R E      +Y+  + V  +  ++ D  Q  TQ    RPYG  LL+AG+D+    L+   PSG   EY+A AIG+   A     E
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFE 178          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 65/170 (38.24%), Postives = 98/170 (57.65%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP GRL+QVEYA EAVK+G+A++G+R+   +VL    ++ S L   +  +KI K DDH+G+A AG  AD R L  + R +       Y  P+ +  L   + D  Q  TQ    RP+GV LL+ G+++    LY   PSG  +E++A +IG+     + +LE
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIEDGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLE 179          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 68/171 (39.77%), Postives = 93/171 (54.39%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD   T +SP G L+QV YA EAVK+G  ++G+++   VV+    +    L       KI+K+DDHIGVA AG+  DGR+L  Y R   + +   Y  P PV  +   +AD  Q  TQ    RP+GV L+ AG++  G   +Y   P G YF ++A AIGS  Q A    E
Sbjct:   12 YDRAATIFSPEGDLYQVRYAFEAVKKGWTSLGIKTNEGVVIAAEKRFIGPLVDIDDIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAYTQHGGVRPFGVALIFAGVNPDGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFE 182          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 71/171 (41.52%), Postives = 97/171 (56.73%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIG-SRSQAAKTYLE 674
            YD  +T +SP GRL+QVEYA EAVK+G+ A+G++    +VL    + NS+L   S  +KIFK+D+HIGVA +GL  D R L    R E      +Y+  + V  L  +L D  Q  TQ    RPYG  LL+AG+ +    L+   PSG   EY+A  IG  R+   K + E
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCNDGIVLLVDKRVNSKLLEPSSIEKIFKIDNHIGVASSGLVGDARSLVDRARVESQVNRVSYDEQIDVEMLSKKLCDHMQTYTQFGGARPYGTALLIAGISDGQFRLFETDPSGTLLEYKATGIGIGRNAVMKVFEE 179          
The following BLAST results are available for this feature:
BLAST of CN181835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA5_MOUSE2.047e-2739.89Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN2.047e-2739.89Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]
PSA5_BOVIN2.047e-2739.89Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSA4_CAEEL5.954e-2739.31Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA2_XENLA5.954e-2738.29Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA2_CAEEL5.954e-2739.53Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSMA_METMA7.777e-2741.18Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_HALWD7.777e-2738.24Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSMA_AERPE7.777e-2739.77Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSMA_METPE1.016e-2641.52Proteasome subunit alpha OS=Methanosphaerula palus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181835 ID=CN181835; Name=CN181835; organism=Citrus sinensis; type=EST; length=675bp
GAGGCTTGGCTTGAAGAAAAAGAAAACACTTTCTACTATTATTATTATTA
TTATTATTATTATTATTATTAAGACGGCTTTTGGTTGCAGTAGATTTACT
TGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAAACCC
TAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAGCCCC
GCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGCAAGG
CTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGCTGCG
TTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTTCAAG
GTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACGGCCG
TGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTACACTT
ACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGACAAG
GCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTGGCCT
GCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAACTGCC
CAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCGATCT
CAAGCTGCAAAGACATACTTGGAAC
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