CN181835

Overview
NameCN181835
Unique NameCN181835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.257e-33
Identity = 80/176 (45.45%), Postives = 107/176 (60.80%), Query Frame = 3
Query:  162 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA---QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIG+++K  VVL    +  S L   S  +KI ++DDHIG A++GL AD R L  + R E  N+ ++Y  P+ V      L D A       + S  RP+GV LL+AG DE G  LYY  PSG +++  A AIGS S+ A + L+
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.560e-33
Identity = 79/176 (44.89%), Postives = 109/176 (61.93%), Query Frame = 3
Query:  162 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPV---GRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIGL++K  VVL    +  S L   S  +KI ++D+HIG A++GL AD R L  + R E  N+ ++Y  P+ V    + +  LA +     + S  RP+GV LL+AG DE G  LYY  PSG +++  A AIGS S+ A + L+
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQ 180          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.618e-32
Identity = 79/176 (44.89%), Postives = 106/176 (60.23%), Query Frame = 3
Query:  162 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA---QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIGL++K  VVL    +  S L   S  +KI ++D+HIG A++GL AD R L  + R E  N+ ++Y  P+ V      L D A       + S  RP+GV LL+AG DE G  LYY  PSG +++    AIGS S+ A + L+
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQ 180          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.029e-32
Identity = 74/170 (43.53%), Postives = 103/170 (60.59%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLE 179          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.029e-32
Identity = 74/170 (43.53%), Postives = 103/170 (60.59%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLE 179          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.029e-32
Identity = 74/170 (43.53%), Postives = 103/170 (60.59%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLE 179          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.029e-32
Identity = 74/170 (43.53%), Postives = 103/170 (60.59%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLE 179          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.029e-32
Identity = 74/170 (43.53%), Postives = 103/170 (60.59%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLE 179          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.029e-32
Identity = 74/170 (43.53%), Postives = 103/170 (60.59%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLE 179          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.029e-32
Identity = 74/173 (42.77%), Postives = 110/173 (63.58%), Query Frame = 3
Query:  168 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            +YD+  T +SP GRL+QVEYAMEA+    +AIG+ +K  VVL    K  S+L   S+  +K++K+DDH+  A+AG+ +D  +L    R +   Y+++Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A AIG+ +QAA++ L+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKATAIGANNQAAQSMLK 176          
The following BLAST results are available for this feature:
BLAST of CN181835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA5A_ARATH4.257e-3345.45Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSA5_ORYSJ5.560e-3344.89Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSA5_SOYBN1.618e-3244.89Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSMA_SULIY8.029e-3243.53Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN8.029e-3243.53Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM8.029e-3243.53Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL8.029e-3243.53Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK8.029e-3243.53Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA8.029e-3243.53Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSA4_SPIOL8.029e-3242.77Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181835 ID=CN181835; Name=CN181835; organism=Citrus sinensis; type=EST; length=675bp
GAGGCTTGGCTTGAAGAAAAAGAAAACACTTTCTACTATTATTATTATTA
TTATTATTATTATTATTATTAAGACGGCTTTTGGTTGCAGTAGATTTACT
TGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAAACCC
TAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAGCCCC
GCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGCAAGG
CTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGCTGCG
TTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTTCAAG
GTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACGGCCG
TGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTACACTT
ACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGACAAG
GCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTGGCCT
GCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAACTGCC
CAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCGATCT
CAAGCTGCAAAGACATACTTGGAAC
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