CN181835

Overview
NameCN181835
Unique NameCN181835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.674e-29
Identity = 71/171 (41.52%), Postives = 104/171 (60.82%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +DD++ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ + +LE
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLE 173          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.187e-29
Identity = 73/170 (42.94%), Postives = 100/170 (58.82%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP GRLFQV YA EAVK+G+ A+G++ K  VVL    +  S L   +  +KIF++DDHI  A +G+ AD RVL    R E   +  TY  P P+  +V ++ D  Q+ TQ    RP+G  LL+AG+++K   LY   PSG YF ++A AIGS    A    E
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNDK-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFE 178          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.187e-29
Identity = 69/170 (40.59%), Postives = 100/170 (58.82%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVV-LGCVNKANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP G L+QV+YA EAVK+G   +G+++K  VV LG   KA+  L     +K+F +DDH+G + AGL +DGR+L  Y R+  + +   Y+ P+ +  L   ++D  Q+ TQ    RP+GV L+V G+D     L+   PSG +  YQA AIG     A  YLE
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKNAVVILGEKKKASQLLDVDSIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVDRGVTKLFMTEPSGQFMPYQAVAIGQGGYNATDYLE 179          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.187e-29
Identity = 74/172 (43.02%), Postives = 102/172 (59.30%), Query Frame = 3
Query:  168 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            +YD  +T +SP G LFQVEYAMEAV++G+ A+G+R K  +VLG   KA ++L   +  +KI K+DDHI +  AGLTAD RVL      EC +Y  T E    V  +   +A   Q  TQ    RP+G+  L+ G D  G  +LY   PSG+Y  ++A AIG  S++   +LE
Sbjct:    5 RYDRAITVFSPDGHLFQVEYAMEAVRKGTVAVGVRGKDVIVLGVEKKATAKLQDARSIRKIVKLDDHICLTFAGLTADSRVLISKALMECQSYRLTVEDSPSVEYISKFIAGIQQRYTQSGGVRPFGISTLIVGFDTDGTPNLYQTDPSGSYSSWKAAAIGRSSKSVGEFLE 176          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.187e-29
Identity = 71/173 (41.04%), Postives = 105/173 (60.69%), Query Frame = 3
Query:  168 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            +YD+  T +SP GRL+QVEYAMEA+    +A+G+ +   VVL    K  S+L   S   +K++K+D H+  A+AG+ +D  +L    R     Y+ +Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A A+G+ SQAA++ L+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLK 176          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.187e-29
Identity = 71/173 (41.04%), Postives = 105/173 (60.69%), Query Frame = 3
Query:  168 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            +YD+  T +SP GRL+QVEYAMEA+    +A+G+ +   VVL    K  S+L   S   +K++K+D H+  A+AG+ +D  +L    R     Y+ +Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A A+G+ SQAA++ L+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLK 176          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.187e-29
Identity = 71/173 (41.04%), Postives = 105/173 (60.69%), Query Frame = 3
Query:  168 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            +YD+  T +SP GRL+QVEYAMEA+    +A+G+ +   VVL    K  S+L   S   +K++K+D H+  A+AG+ +D  +L    R     Y+ +Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A A+G+ SQAA++ L+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLK 176          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.187e-29
Identity = 71/173 (41.04%), Postives = 105/173 (60.69%), Query Frame = 3
Query:  168 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            +YD+  T +SP GRL+QVEYAMEA+    +A+G+ +   VVL    K  S+L   S   +K++K+D H+  A+AG+ +D  +L    R     Y+ +Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A A+G+ SQAA++ L+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLK 176          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.856e-29
Identity = 66/175 (37.71%), Postives = 103/175 (58.86%), Query Frame = 3
Query:  162 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA-----QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKT 665
            + +YD  V T+SP GR+FQ+EYA+EA+K GS ++G+++   V++    +  S L   S   KI ++D HIG  ++G+ AD R+L  + R E  N+ +TY+ P+ V    +   D +         ++   RP+GV LL+AG+DE G  L+   PSG Y  Y A AIG  ++AA+T
Sbjct:    5 KTEYDRGVNTFSPEGRIFQIEYAIEAIKLGSTSLGIQTPDAVIIAAEKRVPSTLVDPSSVNKILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCALATCDLSVQFGESGGRKKLMSRPFGVSLLIAGVDENGPQLWQTDPSGTYTRYDAQAIGGGAEAAQT 179          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.730e-29
Identity = 73/170 (42.94%), Postives = 99/170 (58.24%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP GRLFQV YA EAVK+G+ A+G++    VVL    +  S L   +  +KIF++DDHI  A +G+ AD RVL    R E   +  TY  P P+  +V ++ D  Q+ TQ    RP+G  LL+AG++EK   LY   PSG YF ++A AIGS    A    E
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNEK-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFE 178          
The following BLAST results are available for this feature:
BLAST of CN181835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA7_BOVIN1.674e-2941.52Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSMA_PYRAB2.187e-2942.94Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_METS52.187e-2940.59Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSA7_DICDI2.187e-2943.02Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSA4B_ORYSJ2.187e-2941.04Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI2.187e-2941.04Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4A_ORYSJ2.187e-2941.04Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI2.187e-2941.04Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA5_TRYBB2.856e-2937.71Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSMA_PYRHO3.730e-2942.94Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181835 ID=CN181835; Name=CN181835; organism=Citrus sinensis; type=EST; length=675bp
GAGGCTTGGCTTGAAGAAAAAGAAAACACTTTCTACTATTATTATTATTA
TTATTATTATTATTATTATTAAGACGGCTTTTGGTTGCAGTAGATTTACT
TGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAAACCC
TAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAGCCCC
GCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGCAAGG
CTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGCTGCG
TTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTTCAAG
GTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACGGCCG
TGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTACACTT
ACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGACAAG
GCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTGGCCT
GCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAACTGCC
CAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCGATCT
CAAGCTGCAAAGACATACTTGGAAC
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