CN181835

Overview
NameCN181835
Unique NameCN181835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181835_ssr37 microsatellite CN181835_ssr37:37..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9880 contig Csv1_Contig9880:65..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.730e-29
Identity = 73/170 (42.94%), Postives = 98/170 (57.65%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP GRLFQV YA EAVK+G+ A+G++    VVL    +  S L      +KIF++DDHI  A +G+ AD RVL    R E   Y  TY  P PV  +V ++ D  Q+ TQ    RP+G  LL+AG++++   LY   PSG YF ++A AIGS    A    E
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGINDR-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFE 178          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA7_HUMAN (Proteasome subunit alpha type-7 OS=Homo sapiens GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.730e-29
Identity = 70/171 (40.94%), Postives = 104/171 (60.82%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R +  VVLG   K+ ++L   +  +KI  +DD++ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ + +LE
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLE 173          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 73/170 (42.94%), Postives = 99/170 (58.24%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP GRL+QVEYA EAVK+G+ A+G+++   VVL    + +S+L  SS  +KIFK+D+HIGVA +GL  D R L    R EC     +Y+  + V  L  +L D  Q  TQ    RPYG  LL+AG+ +  + L+   PSG   EY+A  IG    AA    E
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVSDGESRLFETDPSGTLLEYKATGIGIGRPAAMKVFE 178          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 70/171 (40.94%), Postives = 104/171 (60.82%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +D+++ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ + +LE
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLE 173          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 70/171 (40.94%), Postives = 104/171 (60.82%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +D+++ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ + +LE
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLE 173          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 69/174 (39.66%), Postives = 104/174 (59.77%), Query Frame = 3
Query:  168 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL----SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAI-GSRSQAAKTYL 671
            +YD   T +SP GR++QVEYAM A++   A +G+ +K  +VL    K  ++L    +S  +K+FK+D+H+  A+AG+T+D  +L  Y R     + Y Y+ P+PV +LV Q+ D  Q  TQ    RP+GV  L AG D   G  LY + PSGN+  ++A +I G  SQ A++ L
Sbjct:    4 RYDQRTTIFSPEGRVYQVEYAMTAIRHAGATVGILAKDGIVLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQEPMPVEQLVSQICDTKQGYTQYGGLRPFGVSFLYAGWDRHYGFQLYQSDPSGNFAGWKATSIGGENSQVAQSVL 177          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.362e-29
Identity = 69/170 (40.59%), Postives = 100/170 (58.82%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP GRLFQVEYA EAVK+G+ ++G++SK  +VL    +  S+L   +  +KIF++D+HIG A +GL AD R +    R E      TY  P+ V  L  ++ D  Q+ TQ    RP+G  L++ G++ +G  L+   PSG   EY+A AIG+   AA    E
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFGTALIIGGVNGRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFE 178          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.309e-29
Identity = 69/170 (40.59%), Postives = 100/170 (58.82%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  +T +SP G+++QVEYA EAVK+G   +G++ K  VVL    +  S L  SS  +KI+ +D+H+  + +GL AD R+L  Y R   +++ + Y+ P+ V  L   + +  Q  TQ    RP+GV LL+AG+D  GA LY   PSG Y  Y A AIG+ S     +LE
Sbjct:    9 YDRAITIFSPEGKIYQVEYAGEAVKRGWPTVGVKCKAGVVLTAEKRKISALFDSSSLEKIYLIDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPIDVEFLTKAVCNLKQQYTQFGGARPFGVALLIAGVDRHGARLYQTDPSGVYIGYFATAIGAESGTITEFLE 178          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 8.309e-29
Identity = 72/179 (40.22%), Postives = 106/179 (59.22%), Query Frame = 3
Query:  165 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIA------GLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            ++YD  +T +SP G LFQVEYA EAVK+GS A+G+R    VVLG   K+ ++L   +  +KI  +DDH+ +A A      GLTAD RV+    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D+ G + LY   PSG Y  ++A AIG  ++  + +LE
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLE 181          
BLAST of CN181835 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.309e-29
Identity = 68/170 (40.00%), Postives = 95/170 (55.88%), Query Frame = 3
Query:  171 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSE--LSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 674
            YD  VTT+SP GR+FQVEYA +AV      +G++ K  +VLG      S+  L    ++I  V  H G+A+AGL ADGR +    +SE  +Y   Y  P+ V  L  ++A    +CT   W RP+G G+++ G D  G  LY   PSG  ++Y   A+G   QAAKT +E
Sbjct:    8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIE 177          
The following BLAST results are available for this feature:
BLAST of CN181835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSMA_PYRFU3.730e-2942.94Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSA7_HUMAN3.730e-2940.94Proteasome subunit alpha type-7 OS=Homo sapiens GN... [more]
PSMA_METB64.871e-2942.94Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSA7B_XENLA4.871e-2940.94Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA4.871e-2940.94Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA4_DICDI4.871e-2939.66Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSMA_METTH6.362e-2940.59Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_PYRAE8.309e-2940.59Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]
PSA7L_HUMAN8.309e-2940.22Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSA3_ORYSJ8.309e-2940.00Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181835 ID=CN181835; Name=CN181835; organism=Citrus sinensis; type=EST; length=675bp
GAGGCTTGGCTTGAAGAAAAAGAAAACACTTTCTACTATTATTATTATTA
TTATTATTATTATTATTATTAAGACGGCTTTTGGTTGCAGTAGATTTACT
TGCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAAACCC
TAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAGCCCC
GCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGCAAGG
CTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGCTGCG
TTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTTCAAG
GTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACGGCCG
TGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTACACTT
ACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGACAAG
GCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTGGCCT
GCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAACTGCC
CAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCGATCT
CAAGCTGCAAAGACATACTTGGAAC
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