CN181834

Overview
NameCN181834
Unique NameCN181834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.316e-17
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676
            L+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  E
Sbjct:  133 LIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIHDDDDVSPFLEGLE 237          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.636e-17
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = -2
Query:  365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI-RETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676
            L+AG D +G  LY   PSG+ F+++A A+G RSQAA+TYLER F  F     ++L+  AL A+   T  G  L     T+A+VG G PF IL +E  +K +D F+
Sbjct:  134 LIAGYDRQGPRLYQTVPSGDVFDFKATAMGLRSQAARTYLERHFRGFPACDLDELVMHALRALGAATSGGVELNIKNTTIAIVGKGTPFTILTEEEARKYLDGFK 238          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.640e-16
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  365 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 676
            L+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+ YLER    F++    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  E
Sbjct:  132 LIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDMEFTIYDDDDVAPFLEGLE 236          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  374 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL-QGETLKSSICTVAVVGAGEPFHILDQETVQKLID 676
            LV G DE G HL    PSG   EY   ++GSRSQ+A+TY+ER  + F +S+RE+LI  AL A+R+TL + + L     +++V+G  E + + DQ   ++ +D
Sbjct:  133 LVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQNDTKEWLD 234          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_DROME (Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = -2
Query:  383 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL----QGETLKSSICTVAVVGAGEPFHILDQETVQK 676
            LVAG DE+G H+Y   PS  +F  +A +IGSRSQ+A+TYLE+    F +S+++++I+  + AI  TL    QG+       TVA+VG  +PF IL  +   K
Sbjct:  133 LVAGYDERGPHIYQVTPSATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEIIRHGIRAILGTLPTDEQGKDAGQYDITVAIVGKDQPFTILSNKDSAK 234          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = -2
Query:  389 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG-ETLKSSICTVAVVGAGEPFHILDQETV 676
            L+AG D+ GAH+    PS         +IG+RSQ+A+TYLER  +NF +ST E LI  AL+A+R+TL   E L +   ++ +VG   PF +L+   V
Sbjct:  133 LIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLALRDTLPAEENLNAQNTSIGIVGKDSPFSLLEDAQV 229          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  377 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENF--SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 676
            L+ G D+ GAHL    PSGN  E    AIG+RSQ AKTYLER  + F   +   ++LIK  + AI ++L+ E+L     ++A+VG   PF I D E V K I
Sbjct:  133 LIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 234          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = -2
Query:  431 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 676
            LVAG+DEKG  LY   PSG YF ++A AIG  S AAKT+LE+R+ +  E   +D +  A++A++ET +GE  + +I  +AVV
Sbjct:  135 LVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYND--ELELDDAVHTAILALKETFEGELTEDNI-EIAVV 213          
BLAST of CN181834 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 38/91 (41.76%), Postives = 59/91 (64.84%), Query Frame = -2
Query:  404 LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHIL 676
            LVAG DEKG HLY   PSG+YF ++A AIG    ++KT+LE+R+ +  E   ED I+ AL+ I+E  + +  + ++  +A++G  + F IL
Sbjct:  133 LVAGFDEKGPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDDLEI--EDAIQTALITIKEGFETQLTEFNM-ELAIIGKNQEFKIL 220          
The following BLAST results are available for this feature:
BLAST of CN181834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSA1_PONAB4.316e-1740.95Proteasome subunit alpha type-1 OS=Pongo abelii GN... [more]
PSA1_TRYBR5.636e-1743.81Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA1_CHICK1.640e-1639.05Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA1_SCHPO6.890e-1541.18Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA1_DROME6.890e-1542.16Proteasome subunit alpha type-1 OS=Drosophila mela... [more]
PSA1_CAEEL1.535e-1442.27Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]
PSA1_YEAST4.466e-1444.12Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSA2_SCHPO3.201e-1247.56Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA2_DICDI2.709e-1141.76Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181834 ID=CN181834; Name=CN181834; organism=Citrus sinensis; type=EST; length=677bp
CGCTCACTGTATCTAAAGTGTTAAAGCAAGATGTTTGGAGTTTAGGAAAG
GATACTATTAAAATGTTTGTACTGATAAGGCAAGATAATTTGCACCATAA
GCGGAAAAATAAATTGTCCAACAGAATGATTTCCCGAAGTGCAACCCATA
TTCCATGGAACCCATCAAACACATGCTTAAACTCCTCATCTAAAGACGAA
GACGAAGAAGCTGACTTCTGGTCCTTGCATCCTCAAATGTCCATTGGAGC
TACACCCTCGCCTGCTGGAGCACCTTGTTCTGAAGCTGCGCCTCCTTCTG
CAGCACTGCCTCCTTCTGCAGCACTATCTGGTGCAGCAGCAGGACCCTCT
TCAGTGCCAGCAATCTCAAATGAATCAATTAACTTTTGTACGGTTTCTTG
ATCTAAAATATGAAATGGCTCCCCAGCTCCTACCACAGCAACTGTGCAAA
TAGAACTCTTTAGTGTTTCTCCTTGTAAGGTTTCCCTTATTGCCATGAGA
GCGTCCTTGATCAGATCTTCTCTTGTAGATTCTGAAAAGTTCTCAAACCT
GCGTTCCAAGTATGTCTTTGCAGCTTGAGATCGGGACCCAATGGCAAATG
CTTGATACTCAAAATAGTTCCCACTTGGGCAGTTATAATAAAGGTGGGCT
CCTTTTTCATCCAAGCCAGCAACCAGC
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