CN181831

Overview
NameCN181831
Unique NameCN181831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_LACH4 (10 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 525
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP  GEVVAVGEG       K+ +SVK G  V+Y +Y+GT +E+ G  +L+L E D++ I
Sbjct:    2 LQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVEYEGEKYLVLHEKDILAI 92          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_GEOTN (10 kDa chaperonin OS=Geobacillus thermodenitrificans (strain NG80-2) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 528
            +KPLGDR+++++   EEKT  GI LP TA+ KPQ G VVAVG G+ +    ++   V+ G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    2 LKPLGDRIVIEVVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_GEOSW (10 kDa chaperonin OS=Geobacillus sp. (strain WCH70) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 528
            +KPLGDRV++++   EEKT  GI LP TA+ KPQ G VVAVG+G+ +   + +   V+ G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    2 LKPLGDRVVIEVIETEEKTASGIVLPDTAKEKPQEGRVVAVGKGRVLDSGECVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_GEOKA (10 kDa chaperonin OS=Geobacillus kaustophilus GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 528
            +KPLGDR+++++   EEKT  GI LP TA+ KPQ G VVAVG G+ +    ++   V+ G ++I+SKYAGTE++++G  +LILRE D++ ++
Sbjct:    1 MKPLGDRIVIEVVETEEKTASGIVLPDTAKEKPQEGRVVAVGAGRVLDNGQRIAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 92          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_BACSU (10 kDa chaperonin OS=Bacillus subtilis GN=groS PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 42/92 (45.65%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 528
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + VK G ++I+SKYAGTE+++ G  +LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_BACA2 (10 kDa chaperonin OS=Bacillus amyloliquefaciens (strain FZB42) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 42/92 (45.65%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 528
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + VK G ++I+SKYAGTE+++ G  +LILRE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_TETHA (10 kDa chaperonin OS=Tetragenococcus halophilus GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 531
            +KPLGDRVL+++   EEKT GGI L STAQ KPQ G+VVAVG G+T+   +L  + V  G  V++ KYAG+E++++G +++I    D+V I+E
Sbjct:    2 LKPLGDRVLIEVSEEEEKTVGGIVLASTAQEKPQTGKVVAVGPGRTLDNGELATVPVNVGDTVLFEKYAGSEVKYDGQDYMIFSAKDLVAIVE 94          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  250 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVV 519
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK     T   + VK G +V+YSKYAGT+++  G ++++L E D++
Sbjct:    9 STVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIKLGGDDYVLLTEKDIL 99          

HSP 2 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  541 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSI 720
            +  +KPL DRVF+KV+ AEE TAGG+LL + +KEKP IG V+ VGPG  +++G   P+ +
Sbjct:    8 VSTVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEV 67          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_PELPD (10 kDa chaperonin OS=Pelobacter propionicus (strain DSM 2379) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  256 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTK-LDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 531
            ++PL DR+LVK    E KT GG+F+P TA+ KPQ GEVVA G GK     K L + VK G +V++ KY+GTE++ +G + L++REDD++ ++E
Sbjct:    3 LRPLHDRILVKRVEEETKTAGGLFIPETAKEKPQRGEVVAAGNGKKTEDGKVLPLDVKVGDKVLFGKYSGTEVKVDGEDFLMMREDDILAVVE 95          
BLAST of CN181831 vs. ExPASy Swiss-Prot
Match: CH10_NOSP7 (10 kDa chaperonin OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 42/94 (44.68%), Postives = 67/94 (71.28%), Query Frame = 1
Query:  250 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 528
            +++KPL DRV VK+   EEKT GG++LP TA+ KPQ GEVVA+G GK     ++ ++ +K G +V+YSKYAGT+++     +++L E D++ ++
Sbjct:    9 STVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQELEIKVGDKVLYSKYAGTDIKLGTEEYVLLSEKDILAVV 102          

HSP 2 Score: 72.0182 bits (175), Expect = 3.614e-12
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  541 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSI 720
            +  +KPL+DRVF+KV  +EE TAGGL L + +KEKP +G V+A+GPG  +E+G+R+ L I
Sbjct:    8 VSTVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQELEI 67          
The following BLAST results are available for this feature:
BLAST of CN181831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 493
Match NameE-valueIdentityDescription
CH10_LACH41.160e-1850.5510 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH10_GEOTN1.160e-1846.7410 kDa chaperonin OS=Geobacillus thermodenitrifica... [more]
CH10_GEOSW1.160e-1847.8310 kDa chaperonin OS=Geobacillus sp. (strain WCH70... [more]
CH10_GEOKA1.160e-1846.7410 kDa chaperonin OS=Geobacillus kaustophilus GN=g... [more]
CH10_BACSU1.160e-1845.6510 kDa chaperonin OS=Bacillus subtilis GN=groS PE=... [more]
CH10_BACA21.160e-1845.6510 kDa chaperonin OS=Bacillus amyloliquefaciens (s... [more]
CH10_TETHA1.515e-1849.4610 kDa chaperonin OS=Tetragenococcus halophilus GN... [more]
CH10_SYNY31.515e-1850.5510 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]
CH10_PELPD1.515e-1848.3910 kDa chaperonin OS=Pelobacter propionicus (strai... [more]
CH10_NOSP71.515e-1844.6810 kDa chaperonin OS=Nostoc punctiforme (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181831 ID=CN181831; Name=CN181831; organism=Citrus sinensis; type=EST; length=725bp
GAGGTCAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCT
CTCTCGCTCTCTCTGCATCTGCAAGATGGCGACAGCTCAGCTAACAGCGT
CATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGA
CCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCCAGCCAACGCTC
TTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACA
CTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTA
GAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAA
GCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGA
AGACTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCG
AAGTATGCAGGGACTGAGTTGGAGTTCAATGGCGCAAATCATCTCATATT
GAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATC
TTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAG
ACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTC
CATTGGAATGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTA
ATAGGAAACCTCTATCCATTGCTCC
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