CN181830

Overview
NameCN181830
Unique NameCN181830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:303..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_LEIXX (10 kDa chaperonin OS=Leifsonia xyli subsp. xyli GN=groS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 48/93 (51.61%), Postives = 67/93 (72.04%), Query Frame = -2 
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            +KPL DR+ IK  EAE+TTA GL++ + +KEKP  G+V AVGPG +D+ GNR PL +A G+ V+YSKY G + K   G +Y+ L A +V+AV+
Sbjct:    5 IKPLEDRIVIKQVEAEQTTASGLVIPDTAKEKPQEGVVEAVGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVK-FGGQDYLVLSARDVLAVV 96

HSP 2 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK---TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            IKPL DR ++K    E+ T  G+ +P TA+ KPQ G V AVG G+      +  LD++V  G +VIYSKY GTE++F G ++L+L   DV+ ++
Sbjct:    5 IKPLEDRIVIKQVEAEQTTASGLVIPDTAKEKPQEGVVEAVGPGRIDDNGNRVPLDVAV--GDKVIYSKYGGTEVKFGGQDYLVLSARDVLAVV 96
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_CLAM3 (10 kDa chaperonin OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = -2 
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            +KPL DR+ I+  EAE+TTA GL++ + +KEKP  G V+AVGPG +D+ GNR PL +A G+ V+YSKY G + K  DG + + L A +V+AV+
Sbjct:    5 IKPLEDRIVIQQVEAEQTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVK-YDGQDLLVLSARDVLAVI 96

HSP 2 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = -2 
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK---TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            IKPL DR +++    E+ T  G+ +P TA+ KPQ GEVVAVG G+      +  LD++V  G +VIYSKY GTE++++G + L+L   DV+ ++E
Sbjct:    5 IKPLEDRIVIQQVEAEQTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVAV--GDKVIYSKYGGTEVKYDGQDLLVLSARDVLAVIE 97
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_SYNS3 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 46/97 (47.42%), Postives = 70/97 (72.16%), Query Frame = -2 
Query:  126 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVL 413
            +  +KPL DRVF+K++E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVV 102

HSP 2 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            +KPLGDR  VKI   EEKT GGI LP TA+ KPQ GEVV VG GK+    ++    V  G +V+YSKYAGT+++     +++L E D++ ++
Sbjct:   11 VKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_PROMA (10 kDa chaperonin OS=Prochlorococcus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = -2 
Query:  123 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 413
            +  +KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V  VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103

HSP 2 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            +KPLGDR  +K+   EEKT GGI LP TA+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++     +++L E D++ ++
Sbjct:   11 VKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_CYAA5 (10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 51142) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 46/94 (48.94%), Postives = 68/94 (72.34%), Query Frame = -2 
Query:  132 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 413
            +  +KPL DR+F+KV+ AEE TAGG+LL + ++EKP IG V+AVGPG  +++G+R  L +  G+ V+YSKYAG D K S G +Y+ L   +++A
Sbjct:    8 VSTVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLS-GEDYVLLSEKDILA 100

HSP 2 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 46/89 (51.69%), Postives = 64/89 (71.91%), Query Frame = -2 
Query:  435 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVV 698
            +KPLGDR  VK+   EEKT GGI LP  AQ KPQ GEVVAVG GK     ++ ++ VK G +V+YSKYAGT+++ +G ++++L E D++
Sbjct:   11 VKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLSGEDYVLLSEKDIL 99
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_SYNP6 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 46/98 (46.94%), Postives = 72/98 (73.47%), Query Frame = -2 
Query:  123 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 413
            +  + PL DRVF+KVAEAEE TAGG++L + +KEKP +G ++AVGPG  +++G+R+   +  G+ V+YSKYAG D K G+D  +Y+ L   +++AV++
Sbjct:    8 VSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGND--DYVLLSEKDILAVVA 103

HSP 2 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            + PLGDR  VK+   EEKT GGI LP  A+ KPQ GE+VAVG GK     ++    VK G +V+YSKYAGT+++    ++++L E D++ ++
Sbjct:   11 VTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGNDDYVLLSEKDILAVV 102
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_SYNE7 (10 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groS PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 46/98 (46.94%), Postives = 72/98 (73.47%), Query Frame = -2 
Query:  123 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 413
            +  + PL DRVF+KVAEAEE TAGG++L + +KEKP +G ++AVGPG  +++G+R+   +  G+ V+YSKYAG D K G+D  +Y+ L   +++AV++
Sbjct:    8 VSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGND--DYVLLSEKDILAVVA 103

HSP 2 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            + PLGDR  VK+   EEKT GGI LP  A+ KPQ GE+VAVG GK     ++    VK G +V+YSKYAGT+++    ++++L E D++ ++
Sbjct:   11 VTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGNDDYVLLSEKDILAVV 102
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_BEUC1 (10 kDa chaperonin OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = -2 
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            +KPL DR+ +K  EAE+TTA GL++ + +KEKP  G V+A+GPG +D+ GNR P+ +A G+ V+YSKY G + K + G  Y+ L A +V+AV+
Sbjct:    5 IKPLEDRIVVKTLEAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRVDDNGNRVPVDVAVGDVVIYSKYGGTEVKYA-GQEYLILSARDVLAVV 96

HSP 2 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = -2 
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            IKPL DR +VK    E+ T  G+ +P TA+ KPQ GEV+A+G G+      ++ + V  G  VIYSKY GTE+++ G  +LIL   DV+ +++
Sbjct:    5 IKPLEDRIVVKTLEAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRVDDNGNRVPVDVAVGDVVIYSKYGGTEVKYAGQEYLILSARDVLAVVQ 97
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_TRIEI (10 kDa chaperonin OS=Trichodesmium erythraeum (strain IMS101) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 43/100 (43.00%), Postives = 70/100 (70.00%), Query Frame = -2 
Query:  123 TDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 422
            T  +  +KPL +RVF+KV+E+EE TAGG+LL +++KEKP +G V++ GPG  +++G R  + +  G+ V+YSKYAG D K   G  Y+ L   +++A+++
Sbjct:    5 TLSVSTVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIK-LGGDEYVLLAEKDILAIVN 103

HSP 2 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            +KPLG+R  VK+   EEKT GGI LP +A+ KPQ GEVV+ G GK     T+ ++ VK G +V+YSKYAGT+++  G  +++L E D++ I+
Sbjct:   11 VKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIKLGGDEYVLLAEKDILAIV 102
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_SYNPX (10 kDa chaperonin OS=Synechococcus sp. (strain WH8102) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 44/97 (45.36%), Postives = 69/97 (71.13%), Query Frame = -2 
Query:  123 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 413
            +  +KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K   G  ++ L   +++A+++
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIK-LGGDEFVLLTEKDILAIVN 103

HSP 2 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            +KPLGDR  +K+   EEKT GGI LP TA+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++  G   ++L E D++ I+
Sbjct:   11 VKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGGDEFVLLTEKDILAIV 102
The following BLAST results are available for this feature:
BLAST of CN181830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_LEIXX2.598e-2051.6110 kDa chaperonin OS=Leifsonia xyli subsp. xyli GN... [more]
CH10_CLAM33.393e-2050.5410 kDa chaperonin OS=Clavibacter michiganensis sub... [more]
CH10_SYNS34.431e-2047.4210 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_PROMA4.431e-2048.9810 kDa chaperonin OS=Prochlorococcus marinus GN=gr... [more]
CH10_CYAA54.431e-2048.9410 kDa chaperonin OS=Cyanothece sp. (strain ATCC 5... [more]
CH10_SYNP65.787e-2046.9410 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]
CH10_SYNE75.787e-2046.9410 kDa chaperonin OS=Synechococcus elongatus (stra... [more]
CH10_BEUC15.787e-2048.3910 kDa chaperonin OS=Beutenbergia cavernae (strain... [more]
CH10_TRIEI7.558e-2043.0010 kDa chaperonin OS=Trichodesmium erythraeum (str... [more]
CH10_SYNPX7.558e-2045.3610 kDa chaperonin OS=Synechococcus sp. (strain WH8... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I18_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181830 ID=CN181830; Name=CN181830; organism=Citrus sinensis; type=EST; length=699bp
GCTGCAATTCTTTATGTTCAAATAAGATTACATTCAAAATCCGTATGCCT
TGAGGCAACTCAACCATAAAATTCAATTCACTAATACATATAAAGCCTCG
CTCAAGTAAACACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCT
CTTAAAGCAATGTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGC
ATACTTGGAATACATCACCGTGTTCCCTGGAGCAATGGATAGAGGTTTCC
TATTACCTTCCTCATCTAGAGGACCGGGTCCAACAGCAATGACCATTCCA
ATGGAAGGTTTCTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGT
TGTCTCCTCAGCCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCT
TAAGATCCTTGATTTCATCTGTTTCAAGAATGCCAACTACGTCATCCTCC
CTCAATATGAGATGATTTGCGCCATTGAACTCCAACTCAGTCCCTGCATA
CTTCGAATAGATGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTTTAG
TCTTCCCAACTGTCTTCCCCTCGCCAACAGCTACCACCTCACCTGCTTGA
GGCTTTGTTTGAGCTGTAGATGGCAGAAAAATACCACCATCAGTTTTCTC
CTCTACAGTCTTGATTTTCACCAACCCTCTATCACCCAAAGGTTTAATT
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