CN181830

Overview
NameCN181830
Unique NameCN181830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = -2 
Query:  132 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 413
            +  +KPL DRVF+KV+ AEE TAGG+LL + +KEKP IG V+ VGPG  +++G   P+ +  G+ V+YSKYAG D K   G +Y+ L   +++A
Sbjct:    8 VSTVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIK-LGGDDYVLLTEKDILA 100

HSP 2 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = -2 
Query:  435 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVV 698
            +KPLGDR  VK+   EEKT GGI LP  A+ KPQ GEVV VG GK     T   + VK G +V+YSKYAGT+++  G ++++L E D++
Sbjct:   11 VKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIKLGGDDYVLLTEKDIL 99
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_CYAP8 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 8801) GN=groS PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 44/96 (45.83%), Postives = 67/96 (69.79%), Query Frame = -2 
Query:  126 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 413
            +  +KPL DRVF+KV+ +EE TAGG+LL + +KEKP IG ++ VGPG  +++G+R    +  G+ V+YSKYAG D K   G +Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQIGEIVTVGPGKRNDDGSRSEPEVKVGDKVLYSKYAGTDIK-LGGEDYVLLSEKDILAVV 102

HSP 2 Score: 92.8189 bits (229), Expect = 1.862e-18
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = -2 
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            +KPLGDR  VK+   EEKT GGI LP TA+ KPQ GE+V VG GK     ++ +  VK G +V+YSKYAGT+++  G ++++L E D++ +++
Sbjct:   11 VKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQIGEIVTVGPGKRNDDGSRSEPEVKVGDKVLYSKYAGTDIKLGGEDYVLLSEKDILAVVD 103
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_MYXXD (10 kDa chaperonin OS=Myxococcus xanthus (strain DK 1622) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = -2 
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            I+PL DR +VK    E KT GG+F+P TA+ KP  G+V+AVG GK     K+  + +K G  +++SKYAGTE++ +G  HLILRE+DV+G++E
Sbjct:    3 IRPLQDRLIVKRVAEENKTKGGLFIPDTAKEKPLEGKVIAVGNGKVQEDGKVRPLDIKAGDTILFSKYAGTEIKLDGEEHLILREEDVLGVIE 95

HSP 2 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = -2 
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            ++PL DR+ +K    E  T GGL + + +KEKP  G VIAVG G + E+G  +PL I  G+T+++SKYAG + K  DG  ++ LR  +V+ V+
Sbjct:    3 IRPLQDRLIVKRVAEENKTKGGLFIPDTAKEKPLEGKVIAVGNGKVQEDGKVRPLDIKAGDTILFSKYAGTEIK-LDGEEHLILREEDVLGVI 94
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_DESDA (10 kDa chaperonin OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 46/94 (48.94%), Postives = 70/94 (74.47%), Query Frame = -2 
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKT--KLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            +KPL DR LVK    EEKT GG+++P TA+ KP  G+VVAVG GK VG    +  ++VK G +V+++KYAGTE++ +G +HL++RE+D++ I++
Sbjct:    3 LKPLNDRVLVKRLETEEKTAGGLYIPDTAKEKPSKGQVVAVGPGK-VGDNGERTALAVKAGDEVLFNKYAGTEVKLDGVDHLVMREEDILAIID 95

HSP 2 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 43/93 (46.24%), Postives = 66/93 (70.97%), Query Frame = -2 
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            LKPLNDRV +K  E EE TAGGL + + +KEKPS G V+AVGPG + + G R  L++  G+ V+++KYAG + K  DG +++ +R  +++A++
Sbjct:    3 LKPLNDRVLVKRLETEEKTAGGLYIPDTAKEKPSKGQVVAVGPGKVGDNGERTALAVKAGDEVLFNKYAGTEVK-LDGVDHLVMREEDILAII 94
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_ARTAT (10 kDa chaperonin OS=Arthrobacter aurescens (strain TC1) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 42/93 (45.16%), Postives = 67/93 (72.04%), Query Frame = -2 
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            +KPL DR+ ++  EAE+TTA GL++ ++++EKP  G V+A+GPG  D+ GNR P+ +A G+ V+YSKY G + K + G  Y+ L A +V+A++
Sbjct:    5 IKPLEDRIVVRPLEAEQTTASGLVIPDSAQEKPQEGEVVAIGPGRFDDNGNRVPVDVAVGDVVIYSKYGGTEVK-TGGNEYLVLSARDVLAIV 96

HSP 2 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK-TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            IKPL DR +V+    E+ T  G+ +P +AQ KPQ GEVVA+G G+      ++ + V  G  VIYSKY GTE++  G  +L+L   DV+ I+
Sbjct:    5 IKPLEDRIVVRPLEAEQTTASGLVIPDSAQEKPQEGEVVAIGPGRFDDNGNRVPVDVAVGDVVIYSKYGGTEVKTGGNEYLVLSARDVLAIV 96
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_MYCTU (10 kDa chaperonin OS=Mycobacterium tuberculosis GN=groS PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -2 
Query:  123 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 407
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK--TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            IKPL D+ LV+    E  T  G+ +P TA+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LIL   DV+ ++
Sbjct:    6 IKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_MYCTA (10 kDa chaperonin OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -2 
Query:  123 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 407
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK--TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            IKPL D+ LV+    E  T  G+ +P TA+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LIL   DV+ ++
Sbjct:    6 IKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_MYCS2 (10 kDa chaperonin OS=Mycobacterium smegmatis GN=groS PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -2 
Query:  123 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 407
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK--TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            IKPL D+ LV+    E  T  G+ +P TA+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LIL   DV+ ++
Sbjct:    6 IKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_MYCBT (10 kDa chaperonin OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -2 
Query:  123 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 407
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK--TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            IKPL D+ LV+    E  T  G+ +P TA+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LIL   DV+ ++
Sbjct:    6 IKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_MYCBP (10 kDa chaperonin OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = -2 
Query:  123 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 407
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  G V+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGK--TVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            IKPL D+ LV+    E  T  G+ +P TA+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LIL   DV+ ++
Sbjct:    6 IKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
The following BLAST results are available for this feature:
BLAST of CN181830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_SYNY31.684e-1947.8710 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]
CH10_CYAP81.684e-1945.8310 kDa chaperonin OS=Cyanothece sp. (strain PCC 88... [more]
CH10_MYXXD2.199e-1949.4610 kDa chaperonin OS=Myxococcus xanthus (strain DK... [more]
CH10_DESDA2.199e-1948.9410 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH10_ARTAT2.199e-1945.1610 kDa chaperonin OS=Arthrobacter aurescens (strai... [more]
CH10_MYCTU2.872e-1947.9210 kDa chaperonin OS=Mycobacterium tuberculosis GN... [more]
CH10_MYCTA2.872e-1947.9210 kDa chaperonin OS=Mycobacterium tuberculosis (s... [more]
CH10_MYCS22.872e-1947.9210 kDa chaperonin OS=Mycobacterium smegmatis GN=gr... [more]
CH10_MYCBT2.872e-1947.9210 kDa chaperonin OS=Mycobacterium bovis (strain B... [more]
CH10_MYCBP2.872e-1947.9210 kDa chaperonin OS=Mycobacterium bovis (strain B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I18_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181830 ID=CN181830; Name=CN181830; organism=Citrus sinensis; type=EST; length=699bp
GCTGCAATTCTTTATGTTCAAATAAGATTACATTCAAAATCCGTATGCCT
TGAGGCAACTCAACCATAAAATTCAATTCACTAATACATATAAAGCCTCG
CTCAAGTAAACACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCT
CTTAAAGCAATGTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGC
ATACTTGGAATACATCACCGTGTTCCCTGGAGCAATGGATAGAGGTTTCC
TATTACCTTCCTCATCTAGAGGACCGGGTCCAACAGCAATGACCATTCCA
ATGGAAGGTTTCTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGT
TGTCTCCTCAGCCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCT
TAAGATCCTTGATTTCATCTGTTTCAAGAATGCCAACTACGTCATCCTCC
CTCAATATGAGATGATTTGCGCCATTGAACTCCAACTCAGTCCCTGCATA
CTTCGAATAGATGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTTTAG
TCTTCCCAACTGTCTTCCCCTCGCCAACAGCTACCACCTCACCTGCTTGA
GGCTTTGTTTGAGCTGTAGATGGCAGAAAAATACCACCATCAGTTTTCTC
CTCTACAGTCTTGATTTTCACCAACCCTCTATCACCCAAAGGTTTAATT
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