CN181830

Overview
NameCN181830
Unique NameCN181830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:303..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_LISMF (10 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain F2365) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = -2 
Query:  129 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 404
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92

HSP 2 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = -2 
Query:  429 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 698
            +KPLGDR ++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +   TK  + V  G  VI++KY+GTE+ + G ++LILRE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_LISMC (10 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = -2 
Query:  129 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 404
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92

HSP 2 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = -2 
Query:  429 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 698
            +KPLGDR ++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +   TK  + V  G  VI++KY+GTE+ + G ++LILRE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_LISIN (10 kDa chaperonin OS=Listeria innocua GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = -2 
Query:  129 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 404
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92

HSP 2 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = -2 
Query:  429 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGK-TKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGI 698
            +KPLGDR ++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +   TK  + V  G  VI++KY+GTE+ + G ++LILRE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_CLOPE (10 kDa chaperonin OS=Clostridium perfringens GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = -2 
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            IKPLGDR ++K    EE T  GI +  TA+ +PQ  EVVAVG G  V   + ++ VK G +V+YSKYAGTE++F G  + ILR+DD++ I+E
Sbjct:    3 IKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94

HSP 2 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = -2 
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            +KPL DRV IK  EAEETT  G+++T  +KE+P    V+AVGPG +  +G R  + +  G+ V+YSKYAG + K  +G  Y  LR  +++A++
Sbjct:    3 IKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAI-VDGKRTEMEVKIGDKVLYSKYAGTEVK-FEGEEYTILRQDDILAIV 93
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_CLOP1 (10 kDa chaperonin OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = -2 
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            IKPLGDR ++K    EE T  GI +  TA+ +PQ  EVVAVG G  V   + ++ VK G +V+YSKYAGTE++F G  + ILR+DD++ I+E
Sbjct:    3 IKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQDDILAIVE 94

HSP 2 Score: 81.2629 bits (199), Expect = 5.605e-15
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = -2 
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            +KPL DRV IK  EAEETT  G+++T  +KE+P    V+AVGPG +  +G R  + +  G+ V+YSKYAG + K  +G  Y  LR  +++A++
Sbjct:    3 IKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAI-VDGKRTEMEVKIGDKVLYSKYAGTEVK-FEGEEYTILRQDDILAIV 93
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_CHLP8 (10 kDa chaperonin OS=Chlorobaculum parvum (strain NCIB 8327) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKL-DISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            +KPL DR +VK    EEKT GG+++P T + KPQ GEVVAVGEGK     +L  + VK G +V+Y KY+GTE++    ++LI+RE D+  IL
Sbjct:    3 LKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEVVAVGEGKVADNGQLVQMQVKVGDKVLYGKYSGTEVQVEAEDYLIMRESDIFAIL 94

HSP 2 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = -2 
Query:  126 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 407
            +LKPL DRV +K A AEE T GGL + +  KEKP  G V+AVG G + + G    + +  G+ V+Y KY+G + +  +  +Y+ +R S++ A+L
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEVVAVGEGKVADNGQLVQMQVKVGDKVLYGKYSGTEVQ-VEAEDYLIMRESDIFAIL 94
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_CALS8 (10 kDa chaperonin OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = -2 
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            I+P+GDR L+K K  EE T  GI LP T + KPQ  EV+ VG G  V   K+++ VK G +VI SKYAGTE++ +G  + I+R+DDV+ I+E
Sbjct:    3 IRPIGDRILIKFKEREEVTKSGIVLPDTVKEKPQIAEVIEVGPGGIVDGEKVEMVVKKGDKVIVSKYAGTEIKIDGEEYTIIRQDDVLAIIE 94

HSP 2 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = -2 
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            ++P+ DR+ IK  E EE T  G++L +  KEKP I  VI VGPG +  +G +  + +  G+ V+ SKYAG + K  DG  Y  +R  +V+A++
Sbjct:    3 IRPIGDRILIKFKEREEVTKSGIVLPDTVKEKPQIAEVIEVGPGGI-VDGEKVEMVVKKGDKVIVSKYAGTEIK-IDGEEYTIIRQDDVLAII 93
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_BACWK (10 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = -2 
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            LKPL DRV I++ +AEE TA G++L E +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++A++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPETAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAII 93

HSP 2 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 43/92 (46.74%), Postives = 66/92 (71.74%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTV-GKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            +KPLGDR ++++   EEKT  GI LP TA+ KPQ G+V+AVG G+ +    ++ + V  G  +I+SKYAGTE+++ G ++LILRE D++ I+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPETAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVKYEGTDYLILRESDILAII 93
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_ANATD (10 kDa chaperonin OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = -2 
Query:  423 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILE 698
            I+P+GDR L+K K  EE T  GI LP T + KPQ  EV+ VG G  V   K+++ VK G +VI SKYAGTE++ +G  + I+R+DDV+ I+E
Sbjct:    3 IRPIGDRILIKFKEREEVTKSGIVLPDTVKEKPQIAEVIEVGPGGIVDGEKVEMVVKKGDKVIVSKYAGTEIKIDGEEYTIIRQDDVLAIIE 94

HSP 2 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = -2 
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            ++P+ DR+ IK  E EE T  G++L +  KEKP I  VI VGPG +  +G +  + +  G+ V+ SKYAG + K  DG  Y  +R  +V+A++
Sbjct:    3 IRPIGDRILIKFKEREEVTKSGIVLPDTVKEKPQIAEVIEVGPGGI-VDGEKVEMVVKKGDKVIVSKYAGTEIK-IDGEEYTIIRQDDVLAII 93
[Close]
BLAST of CN181830 vs. ExPASy Swiss-Prot
Match: CH10_OCEIH (10 kDa chaperonin OS=Oceanobacillus iheyensis GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = -2 
Query:  426 IKPLGDRGLVKIKTVEEKTDGGIFLPSTAQTKPQAGEVVAVGEGKTVGKTKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGIL 698
            IKPLGDR ++++   EE T  GI LP +A+ KPQ G+VVAVG G+     K+ + V  G ++I+SK+AGTE+++ G  +LILRE+D++ I+
Sbjct:    2 IKPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRVENGEKIALEVSEGDRIIFSKFAGTEVKYEGTEYLILRENDILAII 92

HSP 2 Score: 84.7297 bits (208), Expect = 5.070e-16
Identity = 40/93 (43.01%), Postives = 67/93 (72.04%), Query Frame = -2 
Query:  126 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 404
            +KPL DRV I++ E EETTA G++L +++KEKP  G V+AVG G + E G +  L ++ G+ +++SK+AG + K  +GT Y+ LR ++++A++
Sbjct:    2 IKPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRV-ENGEKIALEVSEGDRIIFSKFAGTEVK-YEGTEYLILRENDILAII 92
The following BLAST results are available for this feature:
BLAST of CN181830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_LISMF8.357e-1946.7410 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH10_LISMC8.357e-1946.7410 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH10_LISIN8.357e-1946.7410 kDa chaperonin OS=Listeria innocua GN=groS PE=3... [more]
CH10_CLOPE8.357e-1950.0010 kDa chaperonin OS=Clostridium perfringens GN=gr... [more]
CH10_CLOP18.357e-1950.0010 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_CHLP88.357e-1950.0010 kDa chaperonin OS=Chlorobaculum parvum (strain ... [more]
CH10_CALS88.357e-1950.0010 kDa chaperonin OS=Caldicellulosiruptor saccharo... [more]
CH10_BACWK8.357e-1949.4610 kDa chaperonin OS=Bacillus weihenstephanensis (... [more]
CH10_ANATD8.357e-1950.0010 kDa chaperonin OS=Anaerocellum thermophilum (st... [more]
CH10_OCEIH1.091e-1847.2510 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001I18_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181830 ID=CN181830; Name=CN181830; organism=Citrus sinensis; type=EST; length=699bp
GCTGCAATTCTTTATGTTCAAATAAGATTACATTCAAAATCCGTATGCCT
TGAGGCAACTCAACCATAAAATTCAATTCACTAATACATATAAAGCCTCG
CTCAAGTAAACACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCT
CTTAAAGCAATGTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGC
ATACTTGGAATACATCACCGTGTTCCCTGGAGCAATGGATAGAGGTTTCC
TATTACCTTCCTCATCTAGAGGACCGGGTCCAACAGCAATGACCATTCCA
ATGGAAGGTTTCTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGT
TGTCTCCTCAGCCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCT
TAAGATCCTTGATTTCATCTGTTTCAAGAATGCCAACTACGTCATCCTCC
CTCAATATGAGATGATTTGCGCCATTGAACTCCAACTCAGTCCCTGCATA
CTTCGAATAGATGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTTTAG
TCTTCCCAACTGTCTTCCCCTCGCCAACAGCTACCACCTCACCTGCTTGA
GGCTTTGTTTGAGCTGTAGATGGCAGAAAAATACCACCATCAGTTTTCTC
CTCTACAGTCTTGATTTTCACCAACCCTCTATCACCCAAAGGTTTAATT
back to top