CN181828

Overview
NameCN181828
Unique NameCN181828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:349..992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181828 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.552e-24
Identity = 69/171 (40.35%), Postives = 91/171 (53.22%), Query Frame = -2
Query:  152 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGLKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 643
            +DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   95 SDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CN181828 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.686e-24
Identity = 70/175 (40.00%), Postives = 97/175 (55.43%), Query Frame = -2
Query:  140 EVIHCRWAMLGALGCVFPELLARNGLKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVT------------DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 607
            EVI+ R+AMLGA+G + PE L + GL   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R       G +G+              +P YPGG F +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  102 EVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CN181828 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.389e-22
Identity = 69/158 (43.67%), Postives = 89/158 (56.33%), Query Frame = -2
Query:  146 RELEVIHCRWAMLGALGCVFPELLARNGLKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 616
            RE E+IH RWAML  LG +  E L           W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DPE  A+L++ EIK+ RLAM +  GF VQA  TGKGPL N A HL+DP++
Sbjct:  137 RECELIHGRWAMLATLGALSVEWLTG-------VTWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280          
BLAST of CN181828 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.120e-22
Identity = 67/171 (39.18%), Postives = 88/171 (51.46%), Query Frame = -2
Query:  152 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGLKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 643
            +DPE+   N + E++H RWAMLGA G   PE L + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG     P    EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   95 SDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CN181828 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.078e-22
Identity = 68/158 (43.04%), Postives = 87/158 (55.06%), Query Frame = -2
Query:  146 RELEVIHCRWAMLGALGCVFPELLARNGLKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 616
            RE E+IH RWAML  LG +  E L           W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DP   A+L++ EIK+ RLAM    GF VQA  TGKGPL N A HL+DP++
Sbjct:  134 RECELIHGRWAMLATLGAITVEWLTG-------VTWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277          
BLAST of CN181828 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 64/152 (42.11%), Postives = 80/152 (52.63%), Query Frame = -2
Query:  170 RELEVIHCRWAMLGALGCVFPELLARNGLKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 616
            RE E+IH RWAMLG LG +  E L           W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG FDPLGLA DPE    LK+ EIK+ RLAM +   F +QA  TGKGP+  LA
Sbjct:  138 RECELIHGRWAMLGTLGAIAVEALTG-------IAWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272          
BLAST of CN181828 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.602e-18
Identity = 66/170 (38.82%), Postives = 87/170 (51.18%), Query Frame = -2
Query:  143 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGLKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 640
            DPE      + E+++ RWAMLG  G + PE+  + G+      W+ AG  Q F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HL+DP +N
Sbjct:   85 DPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of CN181828 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 70/165 (42.42%), Postives = 87/165 (52.73%), Query Frame = -2
Query:  143 AKNRELEVIHCRWAMLGALGCVFPELLARNGLKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 625
            A+ RE E+IH RWAML  LG +  E  A  G+      W +AG       G  Y G   L    SI  +   +V+L+G  E YR         T+P    YPGG FDPL LA +D E    LK  EIK+ RLAM S FG+ VQA+ TG+G L +LA   AD +NN
Sbjct:  131 ARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGKVELD--GASYAG---LSLPFSITQLIWIEVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA-KFADGLNN 276          
BLAST of CN181828 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 63/170 (37.06%), Postives = 86/170 (50.59%), Query Frame = -2
Query:  143 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGLKFGEAVWFKAGAQ-IFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 640
            DPE      + E+++ RWAMLG  G + PE+    G+      W+ AG +  F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA    K KEI NGRLAM +  GF +Q  VTGKGP +NL  H++DP +N
Sbjct:   84 DPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243          
BLAST of CN181828 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.558e-16
Identity = 60/171 (35.09%), Postives = 83/171 (48.54%), Query Frame = -2
Query:  140 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGLKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 643
            ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +                    L +    + +    E +R  GG     GE+ D  YPG  FDPL L  D       +  E+KNGRLA+ ++ G   Q + TG+ PL NL+ HLA+P+  N
Sbjct:  217 ADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGAN 354          

HSP 2 Score: 85.5001 bits (210), Expect = 2.558e-16
Identity = 67/162 (41.36%), Postives = 83/162 (51.23%), Query Frame = -2
Query:  167 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGLKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG---EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 643
            ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A QVV    +E +R  GG L    E  D  YPG  FDPL L  +       K  EIKNGRLAM  MFG  VQ+ VTGK P+ NL D
Sbjct:  401 ADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPINNLID 530          

HSP 3 Score: 80.8777 bits (198), Expect = 6.301e-15
Identity = 61/171 (35.67%), Postives = 82/171 (47.95%), Query Frame = -2
Query:  140 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGLKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 643
            ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A                          I   +V +  A  G + +A G + E +DP  +YPG  FDPL L  D       K  EIKNGRLA+ ++ GF VQ  V G  PL NLA+HL  P+  N
Sbjct:   32 ADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRN 166          
The following BLAST results are available for this feature:
BLAST of CN181828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB12_SOLLC2.552e-2440.35Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_PEA5.686e-2440.00Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4A_ARATH2.389e-2243.67Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB12_PETHY3.120e-2239.18Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB4B_ARATH9.078e-2243.04Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH7.193e-1942.11Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB24_ARATH1.602e-1838.82Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB29_CHLRE3.022e-1742.42Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB24_PEA3.947e-1737.06Chlorophyll a-b binding protein P4, chloroplastic ... [more]
LH18_EUGGR2.558e-1635.09Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I17_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181828 ID=CN181828; Name=CN181828; organism=Citrus sinensis; type=EST; length=644bp
TATAAATAATCACAACTCAAATTAAAGCTTCCATGAGCTCACAACAGATT
TACATGATATCCAAGAAACCGAAAAGAGAAAAACTCTTATCAACCGAAGC
TCACTTTCCGGGGACAAAGTTGGTGGCGTAGGCCCAGGCATTGTTATTGA
CAGGGTCAGCCAAGTGGTCGGCCAAGTTCTCTAACGGTCCCTTGCCGGTG
ACAATGGCCTGAACGAAGAAACCAAACATGGAGAACATAGCCAACCTTCC
ATTCTTGATTTCCTTAACCTTGAGCTCAGCAAAAGCCTCCGGGTCATCAG
CCAAACCCAATGGATCAAAGCTGCCACCTGGGTACAATGGGTCAGTCACT
TCACCGAGCGGCCCTCCAGCAATTCTGTAACCCTCAACGGCTCCCATCAA
GACCACCTGGCAAGCCCAGATGGCCAAGATGCTCTGAGCGTGGATCAGGC
TTGGGTTCCCCAAGTAGTCAAGCCCGCCCTCGCTGAAAATCTGGGCCCCC
GCCTTGAACCACACGGCCTCACCGAACTTGAGTCCGTTGCGGGCCAAGAG
CTCCGGGAAGACGCATCCAAGAGCTCCCAACATGGCCCATCTGCAGTGGA
TGACTTCGAGTTCACGGTTCTTGGCAAAGGTTTCTGGGTCAGCT
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