CN181818

Overview
NameCN181818
Unique NameCN181818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2284 contig Csv1_Contig2284:1..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181818 vs. ExPASy Swiss-Prot
Match: COPE_BOVIN (Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 5.205e-30
Identity = 71/156 (45.51%), Postives = 94/156 (60.26%), Query Frame = -1
Query:  173 ALNVQIFLKMHSSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 631
            A+ VQI LK+   D A ++L+ MQ  DED TLTQLA AW++LA GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G ++ AEG            PETL NLVV S H GK    T+RYL+QLK  H  H  +K   + +  F+R +   A
Sbjct:  150 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQYA 305          
BLAST of CN181818 vs. ExPASy Swiss-Prot
Match: COPE_DICDI (Coatomer subunit epsilon OS=Dictyostelium discoideum GN=cope PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.620e-17
Identity = 50/147 (34.01%), Postives = 79/147 (53.74%), Query Frame = -1
Query:  194 VQIFLKMHSSDYAERQLRAMQQI-DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKST---SRYLNQLKLTHPDHMLVKRASSGDESFE 622
            +QIFLK+   D A++    M++I D D T   L+ AW+N+  G  K++ A   F++ +E+Y  T L+LNG+AVC + M  F++AE            + +TLANL+ C ++  K      R++NQLK   P H      +  +  FE
Sbjct:  147 IQIFLKIDRLDLAQKAYDTMKKIIDPDATPALLSLAWINIYNGEEKLKSALSSFEEMAERYGPTPLLLNGQAVCAIGMKRFEKAESLLLESIEKNPKNSDTLANLINCYINMKKPNEIIQRFINQLKTLSPKHDWTSAVNEAEALFE 293          
The following BLAST results are available for this feature:
BLAST of CN181818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
COPE_BOVIN5.205e-3045.51Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=... [more]
COPE_DICDI8.620e-1734.01Coatomer subunit epsilon OS=Dictyostelium discoide... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001I09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181818 ID=CN181818; Name=CN181818; organism=Citrus sinensis; type=EST; length=637bp
GAGGATTTCTTGAAATATTTAACATATAGAGACGTATCTTTATCCAAGAA
TTCAAAAAGGGTAAATACCCAACTCTATGCTAACAAACACAATCTTTCAA
ATCAATCATATACTTCTCTTGTAGGTTACAAAAATCATTCACCTCTTGGC
CCCAAAATGACTCTAGTTTTCAGGCAACAGATTGAAGTGCTCTTTCAAAG
CTCTCATCTCCGGATGAAGCACGCTTGACAAGCATGTGGTCTGGGTGTGT
AAGCTTCAACTGGTTGAGGTAACGTGAAGTTGATTTTCCTTGGTGAAGAC
TGCATACAACCAGGTTGGCAAGAGTTTCTGGATCTTTAGCATCCTTGTTG
AGTGCATCAAGCAACAATCCTTCAGCTTCATCAAAGTTCCCCATATGCAT
GCAGCAAACAGCCTTTCCATTCAAGATCAACCCTGTCATTGGATACTTCT
CAGAGAAATCTTGAAAGATGAGATATGCTTCCTGTATCTTGGAACCACCC
ACTGCCAAATTCAACCAAGCATTTGCAAGTTGAGTTAGGGTGTGGTCCTC
ATCAATCTGTTGCATGGCCCTCAGCTGTCTCTCTGCATAGTCAGAACTGT
GCATCTTAAGGAATATTTGGACATTCAATGCATGTAA
back to top