CN181817

Overview
NameCN181817
Unique NameCN181817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1242..1756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK5_VITVI (S-adenosylmethionine synthetase 5 OS=Vitis vinifera GN=METK5 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.518e-27
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = -3
Query:  340 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 513
            ILKIVKE+FDFRPGM+ INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK
Sbjct:  333 ILKIVKENFDFRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK2_SOLLC (S-adenosylmethionine synthetase 2 OS=Solanum lycopersicum GN=SAM2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.982e-27
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            IL IVKE+FDFRPGM++INLDL RGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KP+A
Sbjct:  333 ILNIVKENFDFRPGMISINLDLLRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPEA 393          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK2_BETVU (S-adenosylmethionine synthetase 2 OS=Beta vulgaris GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.982e-27
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = -3
Query:  340 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 513
            ILKIVKE+FDFRPGMM+INLDLKRGGNGRF KTAAYGHFGRDDPDFTWEVVKPLKWEK
Sbjct:  333 ILKIVKETFDFRPGMMSINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEVVKPLKWEK 390          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK1_PETCR (S-adenosylmethionine synthetase 1 (Fragment) OS=Petroselinum crispum GN=SMS-1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.382e-27
Identity = 54/58 (93.10%), Postives = 58/58 (100.00%), Query Frame = -3
Query:  340 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 513
            ILKIVKE+FDFRPGM++INLDLKRGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:  176 ILKIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 233          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK2_PINCO (S-adenosylmethionine synthetase 2 OS=Pinus contorta GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.416e-27
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            IL+I+KE FDFRPGM+TINLDLKRGGNGRF KTAAYGHFGRDDPDFTWE VKPLKWEK QA
Sbjct:  333 ILEIIKEHFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWETVKPLKWEKAQA 393          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK1_CATRO (S-adenosylmethionine synthetase 1 OS=Catharanthus roseus GN=SAMS1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.768e-27
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = -3
Query:  340 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 513
            ILKIVKE+FDFRPGM+ INLDLKRGG+GRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK
Sbjct:  333 ILKIVKENFDFRPGMIAINLDLKRGGSGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK4_VITVI (S-adenosylmethionine synthetase 4 OS=Vitis vinifera GN=METK4 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.839e-27
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = -3
Query:  334 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 513
            ILKIVKESFDFRPGM+ INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK EK Q
Sbjct:  333 ILKIVKESFDFRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKAEKAQ 392          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK2_PICSI (S-adenosylmethionine synthetase 2 OS=Picea sitchensis GN=METK2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.839e-27
Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            IL+++KE+FDFRPGM+TINLDLKRGGNGRF KTAAYGHFGRDDPDFTWE VKPLKW+K QA
Sbjct:  333 ILELIKENFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWETVKPLKWDKAQA 393          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK2_PETCR (S-adenosylmethionine synthetase 2 (Fragment) OS=Petroselinum crispum GN=SMS-2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.839e-27
Identity = 53/58 (91.38%), Postives = 58/58 (100.00%), Query Frame = -3
Query:  340 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 513
            IL+IVKE+FDFRPGM++INLDLKRGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:   87 ILQIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 144          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK_DENCR (S-adenosylmethionine synthetase OS=Dendrobium crumenatum GN=SAMS PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.285e-26
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKE+FDFRPGM+TINLDLKRGGN RF+KTAAYGHFGRDDPDFTWEVVKPLKW+KP A
Sbjct:  336 ILKIVKENFDFRPGMITINLDLKRGGN-RFIKTAAYGHFGRDDPDFTWEVVKPLKWDKPAA 395          
The following BLAST results are available for this feature:
BLAST of CN181817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
METK5_VITVI1.518e-2794.83S-adenosylmethionine synthetase 5 OS=Vitis vinifer... [more]
METK2_SOLLC1.982e-2788.52S-adenosylmethionine synthetase 2 OS=Solanum lycop... [more]
METK2_BETVU1.982e-2794.83S-adenosylmethionine synthetase 2 OS=Beta vulgaris... [more]
METK1_PETCR3.382e-2793.10S-adenosylmethionine synthetase 1 (Fragment) OS=Pe... [more]
METK2_PINCO4.416e-2788.52S-adenosylmethionine synthetase 2 OS=Pinus contort... [more]
METK1_CATRO5.768e-2793.10S-adenosylmethionine synthetase 1 OS=Catharanthus ... [more]
METK4_VITVI9.839e-2793.33S-adenosylmethionine synthetase 4 OS=Vitis vinifer... [more]
METK2_PICSI9.839e-2785.25S-adenosylmethionine synthetase 2 OS=Picea sitchen... [more]
METK2_PETCR9.839e-2791.38S-adenosylmethionine synthetase 2 (Fragment) OS=Pe... [more]
METK_DENCR1.285e-2690.16S-adenosylmethionine synthetase OS=Dendrobium crum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001I09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181817 ID=CN181817; Name=CN181817; organism=Citrus sinensis; type=EST; length=515bp
TACAACTCGCTGCTGCCTTCATTCTACATTCCAAAAATAGTCGTAAGCAA
AAGGAAGAATTTTACTAATTCCAGGCACCAGTTGAGCAAAATTCTCAATC
GATATCACTACACAACAGTGGTGACATGGTACATTAAACCAAAACCAAAA
AAGAAGTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTAT
GAGTTCTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGAT
AATATTCAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAG
GGATAGTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACT
TGAGGGGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAG
TGTCCATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAG
ATCCAAATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCA
CAATTTTGAGGATCT
back to top