CN181817

Overview
NameCN181817
Unique NameCN181817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1242..1756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK_PHALU (S-adenosylmethionine synthetase OS=Phaseolus lunatus GN=SAMS PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.678e-26
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = -3
Query:  340 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 513
            ILKIVKE+FDFRPGM++INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:  334 ILKIVKENFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 391          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.192e-26
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = -3
Query:  340 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 513
            ILKIVKE+FDFRPGM++INLDL RGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKWEK
Sbjct:  308 ILKIVKETFDFRPGMISINLDLLRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 365          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK2_POPTR (S-adenosylmethionine synthetase 2 OS=Populus trichocarpa GN=METK2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.883e-26
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = -3
Query:  334 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 513
            IL IVKE FDFRPGM+ I+LDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK EKPQ
Sbjct:  333 ILNIVKEKFDFRPGMIAISLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKSEKPQ 392          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK5_POPTR (S-adenosylmethionine synthetase 5 OS=Populus trichocarpa GN=METK5 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.377e-26
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = -3
Query:  343 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 513
            IL+IVKESFDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  334 ILQIVKESFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK3_POPTR (S-adenosylmethionine synthetase 3 OS=Populus trichocarpa GN=METK3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.377e-26
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = -3
Query:  343 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 513
            IL+IVKESFDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  334 ILQIVKESFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK2_SUASA (S-adenosylmethionine synthetase 2 OS=Suaeda salsa GN=METK2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.377e-26
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKE+FDFRPGM++INLDLKRGGN RF KTAAYGHFGRDDPDFTWE VKPLKWEK  A
Sbjct:  333 ILKIVKENFDFRPGMISINLDLKRGGNARFQKTAAYGHFGRDDPDFTWETVKPLKWEKVPA 393          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK_GOSHI (S-adenosylmethionine synthetase OS=Gossypium hirsutum GN=SAMS PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.329e-26
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLKW+K  A
Sbjct:  333 ILKIVKETFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRDDTDFTWEVVKPLKWDKVHA 393          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK_PINBN (S-adenosylmethionine synthetase OS=Pinus banksiana GN=METK PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.088e-25
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            IL+I+KE FDFRPGM++INLDLKRGGNGR  KTAAYGHFGRDDPDFTWE VKPLKWEK QA
Sbjct:  333 ILEIIKEHFDFRPGMISINLDLKRGGNGRSQKTAAYGHFGRDDPDFTWETVKPLKWEKAQA 393          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK3_ORYSJ (S-adenosylmethionine synthetase 3 OS=Oryza sativa subsp. japonica GN=METK3 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.088e-25
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            IL+IV E+FDFRPGM+ INLDL RGGNGR+LKTAAYGHFGR+DPDFTWEVVKPLKWE+P A
Sbjct:  336 ILRIVTENFDFRPGMIIINLDLMRGGNGRYLKTAAYGHFGREDPDFTWEVVKPLKWEEPSA 396          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK2_CATRO (S-adenosylmethionine synthetase 2 OS=Catharanthus roseus GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.088e-25
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK+EK +A
Sbjct:  333 ILKIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKFEKVEA 393          
The following BLAST results are available for this feature:
BLAST of CN181817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
METK_PHALU1.678e-2691.38S-adenosylmethionine synthetase OS=Phaseolus lunat... [more]
METK1_PEA2.192e-2691.38S-adenosylmethionine synthetase 1 (Fragment) OS=Pi... [more]
METK2_POPTR4.883e-2690.00S-adenosylmethionine synthetase 2 OS=Populus trich... [more]
METK5_POPTR6.377e-2691.23S-adenosylmethionine synthetase 5 OS=Populus trich... [more]
METK3_POPTR6.377e-2691.23S-adenosylmethionine synthetase 3 OS=Populus trich... [more]
METK2_SUASA6.377e-2686.89S-adenosylmethionine synthetase 2 OS=Suaeda salsa ... [more]
METK_GOSHI8.329e-2686.89S-adenosylmethionine synthetase OS=Gossypium hirsu... [more]
METK_PINBN1.088e-2585.25S-adenosylmethionine synthetase OS=Pinus banksiana... [more]
METK3_ORYSJ1.088e-2583.61S-adenosylmethionine synthetase 3 OS=Oryza sativa ... [more]
METK2_CATRO1.088e-2586.89S-adenosylmethionine synthetase 2 OS=Catharanthus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181817 ID=CN181817; Name=CN181817; organism=Citrus sinensis; type=EST; length=515bp
TACAACTCGCTGCTGCCTTCATTCTACATTCCAAAAATAGTCGTAAGCAA
AAGGAAGAATTTTACTAATTCCAGGCACCAGTTGAGCAAAATTCTCAATC
GATATCACTACACAACAGTGGTGACATGGTACATTAAACCAAAACCAAAA
AAGAAGTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTAT
GAGTTCTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGAT
AATATTCAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAG
GGATAGTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACT
TGAGGGGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAG
TGTCCATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAG
ATCCAAATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCA
CAATTTTGAGGATCT
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