CN181808

Overview
NameCN181808
Unique NameCN181808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:22..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.969e-52
Identity = 73/131 (55.73%), Postives = 82/131 (62.60%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 687
            K +   F AQT HETTGGW  AP G +AWGYCF  E    SDYC P+  +PC    +YYGRGPIQLS NYNY               NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D
Sbjct:   77 KREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLA--NPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGAD 205          

HSP 2 Score: 77.0258 bits (188), Expect = 1.969e-52
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            +  I+SR  FD +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   +KRE+AAF
Sbjct:   25 VSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAF 83          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 148.673 bits (374), Expect = 4.353e-52
Identity = 74/131 (56.49%), Postives = 84/131 (64.12%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 687
            K +   F AQT HETTGGW  AP G +AWGYCF  E    S+YC P+  +PC  GK YYGRGPIQLS NYNY               NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D
Sbjct:  129 KREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTD 257          

HSP 2 Score: 75.8702 bits (185), Expect = 4.353e-52
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            +  I+SR +FD +L +RND  C A+GFYTYDAF+ AA AF GFG +G    RKRE+AAF
Sbjct:   77 VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAF 135          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 9.659e-52
Identity = 71/125 (56.80%), Postives = 81/125 (64.80%), Query Frame = 1
Query:  325 FFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 687
            F AQT HETTGGW  AP G +AWGYCF  E    +DYC P+  +PC    +YYGRGPIQLS NYNY               NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D
Sbjct:   83 FLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGAD 205          

HSP 2 Score: 75.485 bits (184), Expect = 9.659e-52
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            +  IIS   FD +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKR++AAF
Sbjct:   25 VSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAF 83          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.047e-50
Identity = 69/133 (51.88%), Postives = 83/133 (62.41%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPP--SDYC--DPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 687
            K +   F AQT HETTGGW  AP G Y+WGYCF  E +    SDYC     +PC    KYYGRGPIQ+S+NYNY              +NPDL+A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+ ND
Sbjct:  131 KREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY--GPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGND 261          

HSP 2 Score: 77.7962 bits (190), Expect = 1.047e-50
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            +  I+SR +FD +L +RND  CPA+ FYTYDAF+ AA AFP F  +G+   RKRE+AAF
Sbjct:   79 VASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAF 137          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.780e-50
Identity = 71/132 (53.79%), Postives = 86/132 (65.15%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSD-YCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 687
            K +   F AQT HETTGGWP AP G Y+WGYCF  E +  +  YC+P   +PC    KYYGRGPIQ+++NYNY              NNPDL+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+D
Sbjct:  128 KREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADD 257          

HSP 2 Score: 70.8626 bits (172), Expect = 1.780e-50
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            +  IIS  +FD +L +RND+ C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF
Sbjct:   76 VASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAF 134          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.291e-49
Identity = 69/125 (55.20%), Postives = 80/125 (64.00%), Query Frame = 1
Query:  325 FFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 687
            F AQT HETTGGW  AP G Y+WGYC+  E   P DYC     +PC    KY+GRGPIQ+S+NYNY              NNPDL+A D V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D
Sbjct:   63 FLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLL--NNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVAD 185          

HSP 2 Score: 66.6254 bits (161), Expect = 7.291e-49
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            +  +IS+ +F+ +L +RND  C A+GFYTY+AFI A + F  FG +G+   R +EIAAF
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAF 63          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.614e-48
Identity = 65/121 (53.72%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  325 FFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 687
            FF QT HETTGGW  AP G +AWGYC ++E++P     DP       YYGRGPIQL+  YNY              NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS +D
Sbjct:   84 FFGQTSHETTGGWATAPDGPFAWGYCRVNEITPS----DP------PYYGRGPIQLTHKYNYQLAGDALGLDLV--NNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDD 192          

HSP 2 Score: 71.2478 bits (173), Expect = 1.614e-48
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            +G II+R MF+ +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFF 85          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.614e-48
Identity = 60/130 (46.15%), Postives = 73/130 (56.15%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNA 696
            K++   FF QT HET GG      G +  GYCF+ ++               +YYGRGPIQL+   NY R            NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A
Sbjct:   79 KKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAA 193          

HSP 2 Score: 90.5077 bits (223), Expect = 1.614e-48
Identity = 37/59 (62.71%), Postives = 51/59 (86.44%), Query Frame = 3
Query:  153 GKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            G I++RE+F+ +L +RN++ CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFF 86          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.104e-48
Identity = 62/130 (47.69%), Postives = 76/130 (58.46%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNA 696
            K++   FF QT HET GG      G +  GYCF+ ++    D  D       +YYGRGPIQL+   NY R            NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A
Sbjct:   79 KKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQI----DQSD-------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAA 193          

HSP 2 Score: 90.5077 bits (223), Expect = 2.104e-48
Identity = 37/59 (62.71%), Postives = 51/59 (86.44%), Query Frame = 3
Query:  153 GKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            G I++RE+F+ +L +RN++ CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 86          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.341e-47
Identity = 68/133 (51.13%), Postives = 81/133 (60.90%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS--DYCDPN--YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 687
            K +   F AQT HETTGGW  AP G YAWGYCF  E    +  DYC  +  +PC    KYYGRGPIQLS+N+NY               +PDL+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA+D
Sbjct:  134 KREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADD 264          

HSP 2 Score: 72.4034 bits (176), Expect = 1.341e-47
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAF 326
            +  I+SR +FD +L +RND  CPA  FYTYDAF+ AA AFPGF  +G +    KRE+AAF
Sbjct:   81 VASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAF 140          
The following BLAST results are available for this feature:
BLAST of CN181808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI2_HORVU1.969e-5255.7326 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU4.353e-5256.4926 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIC_SECCE9.659e-5256.80Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI1_ORYSJ1.047e-5051.88Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_ORYSJ1.780e-5053.79Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC7.291e-4955.20Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI11_ORYSJ1.614e-4853.72Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC1.614e-4846.15Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLCI2.104e-4847.69Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI12_ORYSJ1.341e-4751.13Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181808 ID=CN181808; Name=CN181808; organism=Citrus sinensis; type=EST; length=696bp
GAGGCTGTTGCTTTCAAATGAGGCTTATTGGGTCCTTACTAATTTTCTCT
CTAGTTTTATCTTTTGTACTAGGAGGCTCAGCACAGAACTGTGGAAGCGG
CGTTGTGTACGGTGGACGTGATACCGGCCATGGGACGCATGGCGGTGAAC
TGGGCAAGATCATCTCAAGGGAGATGTTTGATGACTTGCTTGAGTATAGA
AATGATGAACGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTTAT
AGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAACCA
TGCGTAAAAGAGAAATCGCTGCCTTTTTTTGCCCAAACTGGCCATGAAAC
TACTGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATT
GCTTTATAAGCGAAGTTAGCCCTCCGTCCGACTACTGTGATCCTAACTAT
CCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCTCTTGGAA
TTACAATTACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGT
TGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCA
GCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGA
AGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCC
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