CN181808

Overview
NameCN181808
Unique NameCN181808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:22..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.043e-47
Identity = 65/135 (48.15%), Postives = 81/135 (60.00%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDP----NYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNA 696
            K +   FFAQT  ET+G         + WGYC ++E++P SDYCDP    +YPC   YYGRGP+QL WNYNY  C           + P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS  D+ A
Sbjct:  115 KRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEA 247          

HSP 2 Score: 70.0922 bits (170), Expect = 5.043e-47
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 3
Query:  165 SREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            +  MF+ +L  RN++ CP +GFYTYDA+  A + +PGFG +G++  RKRE+AAFF
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFF 122          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.149e-46
Identity = 62/130 (47.69%), Postives = 75/130 (57.69%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNA 696
            K++   FF QT HETTGG   A G  +A GYCF+ E +               +YGRGPIQL+   NY              NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A
Sbjct:   71 KKEIAAFFGQTSHETTGGSLSADG-PFAGGYCFVREGNQMGS----------GFYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASA 187          

HSP 2 Score: 90.8929 bits (224), Expect = 7.149e-46
Identity = 37/61 (60.66%), Postives = 54/61 (88.52%), Query Frame = 3
Query:  147 ELGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            ++G I++ ++F+++L+ RND+RCPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF
Sbjct:   18 DVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 78          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.095e-43
Identity = 63/130 (48.46%), Postives = 75/130 (57.69%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNA 696
            K++   FF QT HETTGG   +P G YA GYCF+ E +   +           YYGRGPIQL+   NY              NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A
Sbjct:   78 KKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLREGNQMGN----------GYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSA 194          

HSP 2 Score: 81.2629 bits (199), Expect = 1.095e-43
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            +G I++ ++FD +L+ RND RC A  FYTYDAFI AA +FPGFG +G++T RK+EIAAFF
Sbjct:   26 VGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFF 85          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.427e-43
Identity = 60/124 (48.39%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  325 FFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNA 696
            FF QT HETTGG   A    +  GYCF+ +    +D  D       +YYGRGPIQL+   NY +            NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A
Sbjct:   85 FFGQTSHETTGGSLSAE--PFTGGYCFVRQ----NDQSD-------RYYGRGPIQLTNQNNYEKAGNAIRQDLV--NNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSA 193          

HSP 2 Score: 88.9669 bits (219), Expect = 1.427e-43
Identity = 37/60 (61.67%), Postives = 51/60 (85.00%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            +G I++ ++F+++L+ RND RCPA GFYTYDAFI AA +FPGFG SG++T R++EIAAFF
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFF 86          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.975e-43
Identity = 61/136 (44.85%), Postives = 83/136 (61.03%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCD------PNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNA 696
            K +   F AQ  HETTGGW  AP G YAWG C+  E++P S YCD      P YP +  Y+GRGPIQ+SWN+NY               NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P   DV A
Sbjct:  101 KREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGK-SYHGRGPIQISWNFNY--GPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAA 233          

HSP 2 Score: 62.3882 bits (150), Expect = 6.975e-43
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    RKRE+AAF
Sbjct:   49 VSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAF 107          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.103e-43
Identity = 59/121 (48.76%), Postives = 70/121 (57.85%), Query Frame = 1
Query:  325 FFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 687
            FF QT HETTGG   A    +  GYCF+ +    +D  D       +YYGRGPIQL+   NY +            NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D
Sbjct:   85 FFGQTSHETTGGSLSAE--PFTGGYCFVRQ----NDQSD-------RYYGRGPIQLTNRNNYEKAGTAIGQELV--NNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAAD 190          

HSP 2 Score: 87.4261 bits (215), Expect = 9.103e-43
Identity = 36/60 (60.00%), Postives = 51/60 (85.00%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            +G I++ ++F+++L+ RND RCPA GFYTYDAFI AA +FPGFG +G++T R++EIAAFF
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFF 86          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.175e-42
Identity = 83/149 (55.70%), Postives = 95/149 (63.76%), Query Frame = 1
Query:  262 KLFQALVTLEMKPCVKEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNA 696
            K F +  T       K +   F  QT HETTGGWP AP G YAWGYCF+ E +P S+YC   P YPC  GK YYGRGP+QLSWNYNY  C            NPDL+ATD VLSFK+A+WFWMT Q PKPSCH+V+   W+PSA D  A
Sbjct:   39 KSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLL--GNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAA 185          

HSP 2 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 3
Query:  156 KIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            KIISR MFD +L++RN+  CPA+GFYTYDAF+ AA++FP FG +G+  +RKRE+AAF
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAF 60          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.947e-41
Identity = 84/146 (57.53%), Postives = 97/146 (66.44%), Query Frame = 1
Query:  268 FQALVTLEMKPCVKEKSLPFFAQTGHETTGG--WPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 687
            F A  T   +   K +   F AQT HETTGG  W  AP G YAWGYC+  E++PPS YC  DPNYPC  GK Y+GRGP+QLSWNYNY +C           NNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D
Sbjct:   91 FPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLL--NNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSD 233          

HSP 2 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            L  +ISRE F+ +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKREIAAF
Sbjct:   52 LTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAF 110          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.947e-41
Identity = 84/146 (57.53%), Postives = 97/146 (66.44%), Query Frame = 1
Query:  268 FQALVTLEMKPCVKEKSLPFFAQTGHETTGG--WPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 687
            F A  T   +   K +   F AQT HETTGG  W  AP G YAWGYC+  E++PPS YC  DPNYPC  GK Y+GRGP+QLSWNYNY +C           NNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D
Sbjct:  113 FPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLL--NNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSD 255          

HSP 2 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            L  +ISRE F+ +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKREIAAF
Sbjct:   74 LTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAF 132          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.189e-41
Identity = 62/135 (45.93%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  304 VKEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEV----SPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNA 696
            ++ +   FF QT HETTGG   +   ++ WGYCF  E+    SPP             YYGRGPIQL+   NY               NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  A
Sbjct:   84 IRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAAGNALGLDLV--GNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAA 202          

HSP 2 Score: 71.633 bits (174), Expect = 8.189e-41
Identity = 32/61 (52.46%), Postives = 46/61 (75.41%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFF 329
            +G +I++ +F+ +L  R++ +CPARGFYTYDAFI AA +FP FG SG    + +RE+AAFF
Sbjct:   32 VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFF 92          
The following BLAST results are available for this feature:
BLAST of CN181808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI8_POPTR5.043e-4748.15Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIB_SOLLC7.149e-4647.69Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_PETHY1.095e-4348.46Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIP_TOBAC1.427e-4348.39Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI10_ORYSJ6.975e-4344.85Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIQ_TOBAC9.103e-4348.76Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIT_CARPA9.175e-4255.70Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_GOSHI5.947e-4157.53Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI5.947e-4157.53Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI8_ORYSJ8.189e-4145.93Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181808 ID=CN181808; Name=CN181808; organism=Citrus sinensis; type=EST; length=696bp
GAGGCTGTTGCTTTCAAATGAGGCTTATTGGGTCCTTACTAATTTTCTCT
CTAGTTTTATCTTTTGTACTAGGAGGCTCAGCACAGAACTGTGGAAGCGG
CGTTGTGTACGGTGGACGTGATACCGGCCATGGGACGCATGGCGGTGAAC
TGGGCAAGATCATCTCAAGGGAGATGTTTGATGACTTGCTTGAGTATAGA
AATGATGAACGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTTAT
AGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAACCA
TGCGTAAAAGAGAAATCGCTGCCTTTTTTTGCCCAAACTGGCCATGAAAC
TACTGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATT
GCTTTATAAGCGAAGTTAGCCCTCCGTCCGACTACTGTGATCCTAACTAT
CCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCTCTTGGAA
TTACAATTACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGT
TGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCA
GCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGA
AGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCC
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