CN181808

Overview
NameCN181808
Unique NameCN181808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.808e-40
Identity = 50/130 (38.46%), Postives = 60/130 (46.15%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNA 696
            K +   F  QT HET G WP A G +Y WGYC +                              NYNY  C             P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA D  A
Sbjct:  137 KREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM------------------------------NYNYGLCGDDLNLPLL--QEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEA 234          

HSP 2 Score: 88.1965 bits (217), Expect = 1.808e-40
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            L  II   MFDD+L+YRND +CPA GFYTY+AFI AA+ FP FGN+G++ MRKREIAAF
Sbjct:   85 LSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAF 143          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.499e-39
Identity = 84/148 (56.76%), Postives = 96/148 (64.86%), Query Frame = 1
Query:  262 KLFQALVTLEMKPCVKEKSLPFFAQTGHETTGG--WPDAPGGEYAWGYCFISEVSPPSDYC--DPNYPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 687
            K F A  T       K +   F AQT HETTGG  W  AP G Y WGYC+  E++P +DYC  DPNYPC  GK Y+GRGP+QL+WNYNY +C           NNPDLLATDP +SFKSA WFWMT Q PKPSCH+VII  W PS +D
Sbjct:  109 KSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNP-ADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLL--NNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSD 252          

HSP 2 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            L  +I+RE FD +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKRE+AAF
Sbjct:   72 LDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAF 130          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.467e-36
Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSAND 687
            K +   F AQT H T+GG        Y+WGYC+       SD+C PN  +PC  GK Y+ RGP+Q+++NYNY               NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D
Sbjct:  149 KREVAAFLAQTSHATSGG-------PYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLL--GNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPAD 271          

HSP 2 Score: 67.0106 bits (162), Expect = 2.467e-36
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            +  +++ + F+ +L +R+D  CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAF 155          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.467e-36
Identity = 55/132 (41.67%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN--YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSAND 687
            K +   F AQT H T+GG        Y+WGYC+       SD+C PN  +PC  GK Y+ RGP+Q+++NYNY               NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D
Sbjct:  149 KREVAAFLAQTSHATSGG-------PYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLL--GNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPAD 271          

HSP 2 Score: 67.0106 bits (162), Expect = 2.467e-36
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAF 326
            +  +++ + F+ +L +R+D  CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAF 155          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.331e-24
Identity = 61/142 (42.96%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  262 KLFQALVTLEMKPCVKEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAND 687
            K F A  T       K +   F AQT HETTGGWP AP G Y        E+   SDY           +GRGPIQ+S+NYNY               NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D
Sbjct:   30 KSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPY--------ELGSTSDY-----------FGRGPIQISYNYNYGAAGKAIGVDLL--RNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTD 150          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.887e-23
Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFW 615
            K +   FFA   HET               +C+I E+  PS +YCD     +PC  GK YYGRGP+Q+SWN+NY               +PD +A  PVL+F++A+W+W
Sbjct:  119 KREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYW 212          

HSP 2 Score: 55.4546 bits (132), Expect = 4.887e-23
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            +  I++ E F  L+  + D+ C A+GFYT DAF+ AA  +P FG +G+    KREIAAFF
Sbjct:   68 VASIVTPEFFAALVA-QADDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFF 126          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.275e-23
Identity = 42/111 (37.84%), Postives = 58/111 (52.25%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTA 624
            K +   FFA   HET               +C+ISE++  + YCDP    +PC    KYYGRGP+Q+SWNYNY               +P  +A D V++FK+A+WFWM +
Sbjct:  120 KREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          

HSP 2 Score: 47.7506 bits (112), Expect = 8.275e-23
Identity = 19/39 (48.72%), Postives = 26/39 (66.67%), Query Frame = 3
Query:  213 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            C  + FYT  AF+ A + +PGF + G++   KREIAAFF
Sbjct:   89 CEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFF 127          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.370e-22
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 618
            K +   FFA   HET               +C+ISE++  + YCD +   +PC    KYYGRGP+Q+SWNYNY               +P+ +A D V++FK+A+WFWM
Sbjct:  131 KREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          

HSP 2 Score: 48.9062 bits (115), Expect = 2.370e-22
Identity = 21/39 (53.85%), Postives = 25/39 (64.10%), Query Frame = 3
Query:  213 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            C  + FYT  AF+ A  A+PGF + G E   KREIAAFF
Sbjct:  100 CEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFF 138          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.152e-21
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 618
            K +   +FA   HET           +A  YC  S+  P    C+PN     +Y+GRGP+QLSWNYNY+             N+PD++  DP++SFK+++WFW+
Sbjct:   97 KREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYP----CNPNK----EYFGRGPMQLSWNYNYI--DAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          

HSP 2 Score: 51.6026 bits (122), Expect = 1.152e-21
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 3
Query:  159 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            I+++E +D +   +    CP + FYT   F+EA  A+PGFG    +  RKREIAA+F
Sbjct:   49 IVTQEFWDGIAS-QAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYF 104          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.280e-21
Identity = 48/135 (35.56%), Postives = 69/135 (51.11%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVN 693
            K +   FFA   HET                C+I+E++  S DYCD N   +PC+   KYYGRGP+Q+SWNYNY               +PD +A DP +SFK+A+WFWM       + H+V++  +  +   +N
Sbjct:  138 KREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMN------NVHQVMLQGFGATIRAIN 251          

HSP 2 Score: 39.6614 bits (91), Expect = 4.280e-21
Identity = 19/53 (35.85%), Postives = 28/53 (52.83%), Query Frame = 3
Query:  171 EMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            E F + ++ +    C  + FYT  +F+ AA ++ GF         KREIAAFF
Sbjct:   93 EAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFF 145          
The following BLAST results are available for this feature:
BLAST of CN181808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_POPTR1.808e-4038.46Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI1_THECC2.499e-3956.76Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI7_ORYSJ2.467e-3641.67Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI2.467e-3641.67Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA1.331e-2442.96Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI6_ORYSJ4.887e-2337.61Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE8.275e-2337.84Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE2.370e-2237.61Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIT_DIOJA1.152e-2136.54Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI5_ORYSJ4.280e-2135.56Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181808 ID=CN181808; Name=CN181808; organism=Citrus sinensis; type=EST; length=696bp
GAGGCTGTTGCTTTCAAATGAGGCTTATTGGGTCCTTACTAATTTTCTCT
CTAGTTTTATCTTTTGTACTAGGAGGCTCAGCACAGAACTGTGGAAGCGG
CGTTGTGTACGGTGGACGTGATACCGGCCATGGGACGCATGGCGGTGAAC
TGGGCAAGATCATCTCAAGGGAGATGTTTGATGACTTGCTTGAGTATAGA
AATGATGAACGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTTAT
AGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAACCA
TGCGTAAAAGAGAAATCGCTGCCTTTTTTTGCCCAAACTGGCCATGAAAC
TACTGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATT
GCTTTATAAGCGAAGTTAGCCCTCCGTCCGACTACTGTGATCCTAACTAT
CCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCTCTTGGAA
TTACAATTACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGT
TGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCA
GCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGA
AGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCC
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